Gene : Seita.6G008600 S. italica v2.2
Defline:  (1 of 1) PTHR11200:SF136 - PHOSPHOINOSITIDE PHOSPHATASE SAC1 Genomic Order:  86
Name:  ? Seita.6G008600 Secondary Identifier:  ? PAC:32701104
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G008600 0.5kb upstream 0.5kb upstream 7059 true scaffold_6: 586248-593306 Setaria italica
Seita.6G008600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 586248-586747 Setaria italica
Seita.6G008600 0.5kb downstream 0.5kb downstream 7059 true scaffold_6: 586748-593806 Setaria italica
Seita.6G008600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 593307-593806 Setaria italica
Seita.6G008600 1.0kb upstream 1.0kb upstream 7559 true scaffold_6: 585748-593306 Setaria italica
Seita.6G008600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 585748-586747 Setaria italica
Seita.6G008600 1.0kb downstream 1.0kb downstream 7559 true scaffold_6: 586748-594306 Setaria italica
Seita.6G008600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 593307-594306 Setaria italica
Seita.6G008600 2.0kb upstream 2.0kb upstream 8559 true scaffold_6: 584748-593306 Setaria italica
Seita.6G008600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 584748-586747 Setaria italica
Seita.6G008600 2.0kb downstream 2.0kb downstream 8559 true scaffold_6: 586748-595306 Setaria italica
Seita.6G008600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 593307-595306 Setaria italica
Seita.6G008600 5.0kb upstream 5.0kb upstream 11559 true scaffold_6: 581748-593306 Setaria italica
Seita.6G008600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 581748-586747 Setaria italica
Seita.6G008600 5.0kb downstream 5.0kb downstream 11559 true scaffold_6: 586748-598306 Setaria italica
Seita.6G008600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 593307-598306 Setaria italica
Seita.6G008600 10.0kb upstream 10.0kb upstream 16559 true scaffold_6: 576748-593306 Setaria italica
Seita.6G008600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 576748-586747 Setaria italica
Seita.6G008600 10.0kb downstream 10.0kb downstream 16559 true scaffold_6: 586748-603306 Setaria italica
Seita.6G008600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 593307-603306 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187040 5267 Panicoideae View MSA
124570303 5269 Grass View MSA
122047437 5273 Angiosperm View MSA
121350498 5274 Embryophyte View MSA
123428410 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.99     High  
cufflinks 13.074        
cufflinks 22.33     High High
cufflinks 25.5     High High
cufflinks 16.618     High  
cufflinks 14.334     High  
cufflinks 13.688     High  
cufflinks 9.306       Low
cufflinks 10.575       Low
cufflinks 7.305       Low
cufflinks 15.917     High  
cufflinks 19.169     High  
cufflinks 25.749     High High
cufflinks 13.751     High  
cufflinks 17.25     High  
cufflinks 15.762     High  
cufflinks 15.603     High  
cufflinks 20.439     High  
cufflinks 16.598     High  
cufflinks 15.752     High  

0 Strain