Gene : Seita.6G011500 S. italica v2.2
Defline:  (1 of 3) 1.3.5.1 - Succinate dehydrogenase (quinone) / Succinic dehydrogenase Genomic Order:  115
Name:  ? Seita.6G011500 Secondary Identifier:  ? PAC:32700105
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-4302 Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  
Sitalica PWY-561 Setaria italica pathologic  
Sitalica PWY-5690 Setaria italica pathologic  
Sitalica PWY-7279 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G011500 0.5kb upstream 0.5kb upstream 6007 true scaffold_6: 791392-797398 Setaria italica
Seita.6G011500 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 796899-797398 Setaria italica
Seita.6G011500 0.5kb downstream 0.5kb downstream 6007 true scaffold_6: 790892-796898 Setaria italica
Seita.6G011500 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 790892-791391 Setaria italica
Seita.6G011500 1.0kb upstream 1.0kb upstream 6507 true scaffold_6: 791392-797898 Setaria italica
Seita.6G011500 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 796899-797898 Setaria italica
Seita.6G011500 1.0kb downstream 1.0kb downstream 6507 true scaffold_6: 790392-796898 Setaria italica
Seita.6G011500 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 790392-791391 Setaria italica
Seita.6G011500 2.0kb upstream 2.0kb upstream 7507 true scaffold_6: 791392-798898 Setaria italica
Seita.6G011500 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 796899-798898 Setaria italica
Seita.6G011500 2.0kb downstream 2.0kb downstream 7507 true scaffold_6: 789392-796898 Setaria italica
Seita.6G011500 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 789392-791391 Setaria italica
Seita.6G011500 5.0kb upstream 5.0kb upstream 10507 true scaffold_6: 791392-801898 Setaria italica
Seita.6G011500 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 796899-801898 Setaria italica
Seita.6G011500 5.0kb downstream 5.0kb downstream 10507 true scaffold_6: 786392-796898 Setaria italica
Seita.6G011500 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 786392-791391 Setaria italica
Seita.6G011500 10.0kb upstream 10.0kb upstream 15507 true scaffold_6: 791392-806898 Setaria italica
Seita.6G011500 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 796899-806898 Setaria italica
Seita.6G011500 10.0kb downstream 10.0kb downstream 15507 true scaffold_6: 781392-796898 Setaria italica
Seita.6G011500 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 781392-791391 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190568 5267 Panicoideae View MSA
124571712 5269 Grass View MSA
122043363 5273 Angiosperm View MSA
121346345 5274 Embryophyte View MSA
123424943 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.316     High  
cufflinks 30.854     High  
cufflinks 51.763     High High
cufflinks 47.99     High  
cufflinks 33.868     High  
cufflinks 28.502     High  
cufflinks 25.243     High Low
cufflinks 33.329     High  
cufflinks 28.412     High  
cufflinks 25.548     High Low
cufflinks 46.467     High  
cufflinks 36.681     High  
cufflinks 41.781     High  
cufflinks 57.341     High High
cufflinks 46.349     High  
cufflinks 23.658     High Low
cufflinks 46.718     High  
cufflinks 24.656     High Low
cufflinks 53.682     High High
cufflinks 47.007     High  

0 Strain