Gene : Seita.6G013900 S. italica v2.2
Defline:  (1 of 1) K16584 - HAUS augmin-like complex subunit 1 (HAUS1) Genomic Order:  139
Name:  ? Seita.6G013900 Secondary Identifier:  ? PAC:32700949
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G013900 0.5kb upstream 0.5kb upstream 3475 true scaffold_6: 906162-909636 Setaria italica
Seita.6G013900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 906162-906661 Setaria italica
Seita.6G013900 0.5kb downstream 0.5kb downstream 3475 true scaffold_6: 906662-910136 Setaria italica
Seita.6G013900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 909637-910136 Setaria italica
Seita.6G013900 1.0kb upstream 1.0kb upstream 3975 true scaffold_6: 905662-909636 Setaria italica
Seita.6G013900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 905662-906661 Setaria italica
Seita.6G013900 1.0kb downstream 1.0kb downstream 3975 true scaffold_6: 906662-910636 Setaria italica
Seita.6G013900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 909637-910636 Setaria italica
Seita.6G013900 2.0kb upstream 2.0kb upstream 4975 true scaffold_6: 904662-909636 Setaria italica
Seita.6G013900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 904662-906661 Setaria italica
Seita.6G013900 2.0kb downstream 2.0kb downstream 4975 true scaffold_6: 906662-911636 Setaria italica
Seita.6G013900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 909637-911636 Setaria italica
Seita.6G013900 5.0kb upstream 5.0kb upstream 7975 true scaffold_6: 901662-909636 Setaria italica
Seita.6G013900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 901662-906661 Setaria italica
Seita.6G013900 5.0kb downstream 5.0kb downstream 7975 true scaffold_6: 906662-914636 Setaria italica
Seita.6G013900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 909637-914636 Setaria italica
Seita.6G013900 10.0kb upstream 10.0kb upstream 12975 true scaffold_6: 896662-909636 Setaria italica
Seita.6G013900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 896662-906661 Setaria italica
Seita.6G013900 10.0kb downstream 10.0kb downstream 12975 true scaffold_6: 906662-919636 Setaria italica
Seita.6G013900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 909637-919636 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180447 5267 Panicoideae View MSA
124568944 5269 Grass View MSA
122046982 5273 Angiosperm View MSA
121344598 5274 Embryophyte View MSA
123426865 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.398        
cufflinks 7.682        
cufflinks 3.273       Low
cufflinks 3.193       Low
cufflinks 2.602       Low
cufflinks 7.928       High
cufflinks 4.862        
cufflinks 7.245        
cufflinks 3.488       Low
cufflinks 7.625        
cufflinks 4.886        
cufflinks 9.038       High
cufflinks 4.969        
cufflinks 4.184        
cufflinks 6.615        
cufflinks 5.23        
cufflinks 8.773       High
cufflinks 5.724        
cufflinks 2.895       Low
cufflinks 7.206        

0 Strain