Gene : Seita.6G022100 S. italica v2.2
Defline:  (1 of 1) PTHR33650:SF1 - CEMA-LIKE PROTON EXTRUSION PROTEIN-LIKE PROTEIN Genomic Order:  221
Name:  ? Seita.6G022100 Secondary Identifier:  ? PAC:32698745
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G022100 0.5kb upstream 0.5kb upstream 5797 true scaffold_6: 1582380-1588176 Setaria italica
Seita.6G022100 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 1587677-1588176 Setaria italica
Seita.6G022100 0.5kb downstream 0.5kb downstream 5797 true scaffold_6: 1581880-1587676 Setaria italica
Seita.6G022100 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 1581880-1582379 Setaria italica
Seita.6G022100 1.0kb upstream 1.0kb upstream 6297 true scaffold_6: 1582380-1588676 Setaria italica
Seita.6G022100 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 1587677-1588676 Setaria italica
Seita.6G022100 1.0kb downstream 1.0kb downstream 6297 true scaffold_6: 1581380-1587676 Setaria italica
Seita.6G022100 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 1581380-1582379 Setaria italica
Seita.6G022100 2.0kb upstream 2.0kb upstream 7297 true scaffold_6: 1582380-1589676 Setaria italica
Seita.6G022100 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 1587677-1589676 Setaria italica
Seita.6G022100 2.0kb downstream 2.0kb downstream 7297 true scaffold_6: 1580380-1587676 Setaria italica
Seita.6G022100 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 1580380-1582379 Setaria italica
Seita.6G022100 5.0kb upstream 5.0kb upstream 10297 true scaffold_6: 1582380-1592676 Setaria italica
Seita.6G022100 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 1587677-1592676 Setaria italica
Seita.6G022100 5.0kb downstream 5.0kb downstream 10297 true scaffold_6: 1577380-1587676 Setaria italica
Seita.6G022100 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 1577380-1582379 Setaria italica
Seita.6G022100 10.0kb upstream 10.0kb upstream 15297 true scaffold_6: 1582380-1597676 Setaria italica
Seita.6G022100 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 1587677-1597676 Setaria italica
Seita.6G022100 10.0kb downstream 10.0kb downstream 15297 true scaffold_6: 1572380-1587676 Setaria italica
Seita.6G022100 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 1572380-1582379 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189690 5267 Panicoideae View MSA
124570581 5269 Grass View MSA
122044615 5273 Angiosperm View MSA
121350431 5274 Embryophyte View MSA
123427516 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.575        
cufflinks 3.166        
cufflinks 3.454        
cufflinks 3.918        
cufflinks 8.918       High
cufflinks 3.263        
cufflinks 6.572        
cufflinks 5.561        
cufflinks 13.795     High High
cufflinks 1.126        
cufflinks 2.935        
cufflinks 0.339       Low
cufflinks 0.659       Low
cufflinks 1.9        
cufflinks 0.533       Low
cufflinks 10.469       High
cufflinks 0.524       Low
cufflinks 4.481        
cufflinks 1.693        
cufflinks 0.411       Low

0 Strain