Gene : Seita.6G022900 S. italica v2.2
Defline:  (1 of 1) PTHR11764//PTHR11764:SF17 - LANOSTEROL SYNTHASE Genomic Order:  229
Name:  ? Seita.6G022900 Secondary Identifier:  ? PAC:32701486
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-2541 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G022900 0.5kb upstream 0.5kb upstream 9244 true scaffold_6: 1630012-1639255 Setaria italica
Seita.6G022900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 1638756-1639255 Setaria italica
Seita.6G022900 0.5kb downstream 0.5kb downstream 9244 true scaffold_6: 1629512-1638755 Setaria italica
Seita.6G022900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 1629512-1630011 Setaria italica
Seita.6G022900 1.0kb upstream 1.0kb upstream 9744 true scaffold_6: 1630012-1639755 Setaria italica
Seita.6G022900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 1638756-1639755 Setaria italica
Seita.6G022900 1.0kb downstream 1.0kb downstream 9744 true scaffold_6: 1629012-1638755 Setaria italica
Seita.6G022900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 1629012-1630011 Setaria italica
Seita.6G022900 2.0kb upstream 2.0kb upstream 10744 true scaffold_6: 1630012-1640755 Setaria italica
Seita.6G022900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 1638756-1640755 Setaria italica
Seita.6G022900 2.0kb downstream 2.0kb downstream 10744 true scaffold_6: 1628012-1638755 Setaria italica
Seita.6G022900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 1628012-1630011 Setaria italica
Seita.6G022900 5.0kb upstream 5.0kb upstream 13744 true scaffold_6: 1630012-1643755 Setaria italica
Seita.6G022900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 1638756-1643755 Setaria italica
Seita.6G022900 5.0kb downstream 5.0kb downstream 13744 true scaffold_6: 1625012-1638755 Setaria italica
Seita.6G022900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 1625012-1630011 Setaria italica
Seita.6G022900 10.0kb upstream 10.0kb upstream 18744 true scaffold_6: 1630012-1648755 Setaria italica
Seita.6G022900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 1638756-1648755 Setaria italica
Seita.6G022900 10.0kb downstream 10.0kb downstream 18744 true scaffold_6: 1620012-1638755 Setaria italica
Seita.6G022900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 1620012-1630011 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028235 5273 Angiosperm View MSA
122181444 5267 Panicoideae View MSA
124581907 5269 Grass View MSA
121297756 5274 Embryophyte View MSA
123335781 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.136       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low  
cufflinks 0.948       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low  

0 Strain