Gene : Seita.6G026400 S. italica v2.2
Defline:  (1 of 1) PTHR11649:SF57 - GTP-BINDING PROTEIN ERG Genomic Order:  264
Name:  ? Seita.6G026400 Secondary Identifier:  ? PAC:32699249
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G026400 0.5kb upstream 0.5kb upstream 5150 true scaffold_6: 1918893-1924042 Setaria italica
Seita.6G026400 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 1923543-1924042 Setaria italica
Seita.6G026400 0.5kb downstream 0.5kb downstream 5150 true scaffold_6: 1918393-1923542 Setaria italica
Seita.6G026400 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 1918393-1918892 Setaria italica
Seita.6G026400 1.0kb upstream 1.0kb upstream 5650 true scaffold_6: 1918893-1924542 Setaria italica
Seita.6G026400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 1923543-1924542 Setaria italica
Seita.6G026400 1.0kb downstream 1.0kb downstream 5650 true scaffold_6: 1917893-1923542 Setaria italica
Seita.6G026400 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 1917893-1918892 Setaria italica
Seita.6G026400 2.0kb upstream 2.0kb upstream 6650 true scaffold_6: 1918893-1925542 Setaria italica
Seita.6G026400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 1923543-1925542 Setaria italica
Seita.6G026400 2.0kb downstream 2.0kb downstream 6650 true scaffold_6: 1916893-1923542 Setaria italica
Seita.6G026400 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 1916893-1918892 Setaria italica
Seita.6G026400 5.0kb upstream 5.0kb upstream 9650 true scaffold_6: 1918893-1928542 Setaria italica
Seita.6G026400 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 1923543-1928542 Setaria italica
Seita.6G026400 5.0kb downstream 5.0kb downstream 9650 true scaffold_6: 1913893-1923542 Setaria italica
Seita.6G026400 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 1913893-1918892 Setaria italica
Seita.6G026400 10.0kb upstream 10.0kb upstream 14650 true scaffold_6: 1918893-1933542 Setaria italica
Seita.6G026400 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 1923543-1933542 Setaria italica
Seita.6G026400 10.0kb downstream 10.0kb downstream 14650 true scaffold_6: 1908893-1923542 Setaria italica
Seita.6G026400 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 1908893-1918892 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181206 5267 Panicoideae View MSA
124572102 5269 Grass View MSA
122042684 5273 Angiosperm View MSA
121343994 5274 Embryophyte View MSA
123428542 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.222        
cufflinks 3.975       High
cufflinks 1.825        
cufflinks 0.784       Low
cufflinks 1.094       Low
cufflinks 3.865       High
cufflinks 1.984        
cufflinks 2.626        
cufflinks 2.384        
cufflinks 1.977        
cufflinks 2.528        
cufflinks 2.986        
cufflinks 1.884        
cufflinks 2.799        
cufflinks 3.339        
cufflinks 1.925        
cufflinks 3.95       High
cufflinks 2.236        
cufflinks 1.15       Low
cufflinks 3.457        

0 Strain