Gene : Seita.6G035100 S. italica v2.2
Defline:  (1 of 7) 2.5.1.84 - All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) / Solanesyl-diphosphate synthase Genomic Order:  351
Name:  ? Seita.6G035100 Secondary Identifier:  ? PAC:32698985
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5805 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G035100 0.5kb upstream 0.5kb upstream 1289 true scaffold_6: 2650718-2652006 Setaria italica
Seita.6G035100 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 2651507-2652006 Setaria italica
Seita.6G035100 0.5kb downstream 0.5kb downstream 1289 true scaffold_6: 2650218-2651506 Setaria italica
Seita.6G035100 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 2650218-2650717 Setaria italica
Seita.6G035100 1.0kb upstream 1.0kb upstream 1789 true scaffold_6: 2650718-2652506 Setaria italica
Seita.6G035100 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 2651507-2652506 Setaria italica
Seita.6G035100 1.0kb downstream 1.0kb downstream 1789 true scaffold_6: 2649718-2651506 Setaria italica
Seita.6G035100 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 2649718-2650717 Setaria italica
Seita.6G035100 2.0kb upstream 2.0kb upstream 2789 true scaffold_6: 2650718-2653506 Setaria italica
Seita.6G035100 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 2651507-2653506 Setaria italica
Seita.6G035100 2.0kb downstream 2.0kb downstream 2789 true scaffold_6: 2648718-2651506 Setaria italica
Seita.6G035100 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 2648718-2650717 Setaria italica
Seita.6G035100 5.0kb upstream 5.0kb upstream 5789 true scaffold_6: 2650718-2656506 Setaria italica
Seita.6G035100 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 2651507-2656506 Setaria italica
Seita.6G035100 5.0kb downstream 5.0kb downstream 5789 true scaffold_6: 2645718-2651506 Setaria italica
Seita.6G035100 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 2645718-2650717 Setaria italica
Seita.6G035100 10.0kb upstream 10.0kb upstream 10789 true scaffold_6: 2650718-2661506 Setaria italica
Seita.6G035100 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 2651507-2661506 Setaria italica
Seita.6G035100 10.0kb downstream 10.0kb downstream 10789 true scaffold_6: 2640718-2651506 Setaria italica
Seita.6G035100 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 2640718-2650717 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190551 5267 Panicoideae View MSA
124466085 5269 Grass View MSA
122051071 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.899        
cufflinks 5.824        
cufflinks 4.026        
cufflinks 3.849        
cufflinks 3.4        
cufflinks 7.267        
cufflinks 3.823        
cufflinks 8.899       High
cufflinks 2.882        
cufflinks 14.04       High
cufflinks 4.958        
cufflinks 4.721        
cufflinks 5.855        
cufflinks 3.239        
cufflinks 4.951        
cufflinks 3.245        
cufflinks 7.285        
cufflinks 1.442       Low
cufflinks 2.03       Low
cufflinks 5.846        

0 Strain