Gene : Seita.5G429900 S. italica v2.2
Genomic Order:  4299 Name:  ? Seita.5G429900
Secondary Identifier:  ? PAC:32681082
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G429900 0.5kb upstream 0.5kb upstream 3838 true scaffold_5: 44893269-44897106 Setaria italica
Seita.5G429900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 44893269-44893768 Setaria italica
Seita.5G429900 0.5kb downstream 0.5kb downstream 3838 true scaffold_5: 44893769-44897606 Setaria italica
Seita.5G429900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 44897107-44897606 Setaria italica
Seita.5G429900 1.0kb upstream 1.0kb upstream 4338 true scaffold_5: 44892769-44897106 Setaria italica
Seita.5G429900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 44892769-44893768 Setaria italica
Seita.5G429900 1.0kb downstream 1.0kb downstream 4338 true scaffold_5: 44893769-44898106 Setaria italica
Seita.5G429900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 44897107-44898106 Setaria italica
Seita.5G429900 2.0kb upstream 2.0kb upstream 5338 true scaffold_5: 44891769-44897106 Setaria italica
Seita.5G429900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 44891769-44893768 Setaria italica
Seita.5G429900 2.0kb downstream 2.0kb downstream 5338 true scaffold_5: 44893769-44899106 Setaria italica
Seita.5G429900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 44897107-44899106 Setaria italica
Seita.5G429900 5.0kb upstream 5.0kb upstream 8338 true scaffold_5: 44888769-44897106 Setaria italica
Seita.5G429900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 44888769-44893768 Setaria italica
Seita.5G429900 5.0kb downstream 5.0kb downstream 8338 true scaffold_5: 44893769-44902106 Setaria italica
Seita.5G429900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 44897107-44902106 Setaria italica
Seita.5G429900 10.0kb upstream 10.0kb upstream 13338 true scaffold_5: 44883769-44897106 Setaria italica
Seita.5G429900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 44883769-44893768 Setaria italica
Seita.5G429900 10.0kb downstream 10.0kb downstream 13338 true scaffold_5: 44893769-44907106 Setaria italica
Seita.5G429900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 44897107-44907106 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197589 5267 Panicoideae View MSA
124590909 5269 Grass View MSA
122050080 5273 Angiosperm View MSA
121311726 5274 Embryophyte View MSA
123348985 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.485        
cufflinks 21.165     High  
cufflinks 34.36     High High
cufflinks 21.701     High  
cufflinks 16.49     High  
cufflinks 26.599     High  
cufflinks 13.656     High  
cufflinks 20.319     High  
cufflinks 7.781       Low
cufflinks 16.176     High  
cufflinks 19.835     High  
cufflinks 9.006       Low
cufflinks 19.127     High  
cufflinks 49.058     High High
cufflinks 21.876     High  
cufflinks 8.056       Low
cufflinks 26.449     High  
cufflinks 3.95       Low
cufflinks 20.88     High  
cufflinks 13.894        

0 Strain