Gene : Seita.5G434000 S. italica v2.2
Defline:  (1 of 2) PTHR12768 - BECLIN 1 Genomic Order:  4340
Name:  ? Seita.5G434000 Secondary Identifier:  ? PAC:32681273
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G434000 0.5kb upstream 0.5kb upstream 4905 true scaffold_5: 45184295-45189199 Setaria italica
Seita.5G434000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 45184295-45184794 Setaria italica
Seita.5G434000 0.5kb downstream 0.5kb downstream 4905 true scaffold_5: 45184795-45189699 Setaria italica
Seita.5G434000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 45189200-45189699 Setaria italica
Seita.5G434000 1.0kb upstream 1.0kb upstream 5405 true scaffold_5: 45183795-45189199 Setaria italica
Seita.5G434000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 45183795-45184794 Setaria italica
Seita.5G434000 1.0kb downstream 1.0kb downstream 5405 true scaffold_5: 45184795-45190199 Setaria italica
Seita.5G434000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 45189200-45190199 Setaria italica
Seita.5G434000 2.0kb upstream 2.0kb upstream 6405 true scaffold_5: 45182795-45189199 Setaria italica
Seita.5G434000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 45182795-45184794 Setaria italica
Seita.5G434000 2.0kb downstream 2.0kb downstream 6405 true scaffold_5: 45184795-45191199 Setaria italica
Seita.5G434000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 45189200-45191199 Setaria italica
Seita.5G434000 5.0kb upstream 5.0kb upstream 9405 true scaffold_5: 45179795-45189199 Setaria italica
Seita.5G434000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 45179795-45184794 Setaria italica
Seita.5G434000 5.0kb downstream 5.0kb downstream 9405 true scaffold_5: 45184795-45194199 Setaria italica
Seita.5G434000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 45189200-45194199 Setaria italica
Seita.5G434000 10.0kb upstream 10.0kb upstream 14405 true scaffold_5: 45174795-45189199 Setaria italica
Seita.5G434000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 45174795-45184794 Setaria italica
Seita.5G434000 10.0kb downstream 10.0kb downstream 14405 true scaffold_5: 45184795-45199199 Setaria italica
Seita.5G434000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 45189200-45199199 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187731 5267 Panicoideae View MSA
124586209 5269 Grass View MSA
122047778 5273 Angiosperm View MSA
121344553 5274 Embryophyte View MSA
123428819 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.003        
cufflinks 8.841        
cufflinks 12.095     High  
cufflinks 13.859     High High
cufflinks 7.939        
cufflinks 8.95        
cufflinks 7.067       Low
cufflinks 8.937        
cufflinks 5.345       Low
cufflinks 7.841        
cufflinks 7.444       Low
cufflinks 13.602     High High
cufflinks 11.834        
cufflinks 9.922        
cufflinks 11.814        
cufflinks 11.147        
cufflinks 11.418        
cufflinks 20.278     High High
cufflinks 10.616        
cufflinks 9.528        

0 Strain