Gene : Seita.5G435100 S. italica v2.2
Defline:  (1 of 1) PTHR11941:SF43 - DELTA(3,5)-DELTA(2,4)-DIENOYL-COA ISOMERASE, MITOCHONDRIAL Genomic Order:  4351
Name:  ? Seita.5G435100 Secondary Identifier:  ? PAC:32684524
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G435100 0.5kb upstream 0.5kb upstream 2334 true scaffold_5: 45271641-45273974 Setaria italica
Seita.5G435100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 45271641-45272140 Setaria italica
Seita.5G435100 0.5kb downstream 0.5kb downstream 2334 true scaffold_5: 45272141-45274474 Setaria italica
Seita.5G435100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 45273975-45274474 Setaria italica
Seita.5G435100 1.0kb upstream 1.0kb upstream 2834 true scaffold_5: 45271141-45273974 Setaria italica
Seita.5G435100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 45271141-45272140 Setaria italica
Seita.5G435100 1.0kb downstream 1.0kb downstream 2834 true scaffold_5: 45272141-45274974 Setaria italica
Seita.5G435100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 45273975-45274974 Setaria italica
Seita.5G435100 2.0kb upstream 2.0kb upstream 3834 true scaffold_5: 45270141-45273974 Setaria italica
Seita.5G435100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 45270141-45272140 Setaria italica
Seita.5G435100 2.0kb downstream 2.0kb downstream 3834 true scaffold_5: 45272141-45275974 Setaria italica
Seita.5G435100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 45273975-45275974 Setaria italica
Seita.5G435100 5.0kb upstream 5.0kb upstream 6834 true scaffold_5: 45267141-45273974 Setaria italica
Seita.5G435100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 45267141-45272140 Setaria italica
Seita.5G435100 5.0kb downstream 5.0kb downstream 6834 true scaffold_5: 45272141-45278974 Setaria italica
Seita.5G435100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 45273975-45278974 Setaria italica
Seita.5G435100 10.0kb upstream 10.0kb upstream 11834 true scaffold_5: 45262141-45273974 Setaria italica
Seita.5G435100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 45262141-45272140 Setaria italica
Seita.5G435100 10.0kb downstream 10.0kb downstream 11834 true scaffold_5: 45272141-45283974 Setaria italica
Seita.5G435100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 45273975-45283974 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184346 5267 Panicoideae View MSA
124569441 5269 Grass View MSA
122044644 5273 Angiosperm View MSA
121346974 5274 Embryophyte View MSA
123427880 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.206        
cufflinks 4.51       Low
cufflinks 18.525     High  
cufflinks 22.52     High High
cufflinks 10.062        
cufflinks 5.104       Low
cufflinks 5.484       Low
cufflinks 12.394        
cufflinks 4.797       Low
cufflinks 24.925     High High
cufflinks 8.343        
cufflinks 12.277        
cufflinks 18.233     High  
cufflinks 32.282     High High
cufflinks 10.356        
cufflinks 8.603        
cufflinks 12.743        
cufflinks 19.631     High  
cufflinks 20.08     High  
cufflinks 13.181        

0 Strain