Gene : Seita.5G438500 S. italica v2.2
Defline:  (1 of 1) PTHR15111 - RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3 Genomic Order:  4385
Name:  ? Seita.5G438500 Secondary Identifier:  ? PAC:32686131
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G438500 0.5kb upstream 0.5kb upstream 5256 true scaffold_5: 45499104-45504359 Setaria italica
Seita.5G438500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 45499104-45499603 Setaria italica
Seita.5G438500 0.5kb downstream 0.5kb downstream 5256 true scaffold_5: 45499604-45504859 Setaria italica
Seita.5G438500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 45504360-45504859 Setaria italica
Seita.5G438500 1.0kb upstream 1.0kb upstream 5756 true scaffold_5: 45498604-45504359 Setaria italica
Seita.5G438500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 45498604-45499603 Setaria italica
Seita.5G438500 1.0kb downstream 1.0kb downstream 5756 true scaffold_5: 45499604-45505359 Setaria italica
Seita.5G438500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 45504360-45505359 Setaria italica
Seita.5G438500 2.0kb upstream 2.0kb upstream 6756 true scaffold_5: 45497604-45504359 Setaria italica
Seita.5G438500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 45497604-45499603 Setaria italica
Seita.5G438500 2.0kb downstream 2.0kb downstream 6756 true scaffold_5: 45499604-45506359 Setaria italica
Seita.5G438500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 45504360-45506359 Setaria italica
Seita.5G438500 5.0kb upstream 5.0kb upstream 9756 true scaffold_5: 45494604-45504359 Setaria italica
Seita.5G438500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 45494604-45499603 Setaria italica
Seita.5G438500 5.0kb downstream 5.0kb downstream 9756 true scaffold_5: 45499604-45509359 Setaria italica
Seita.5G438500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 45504360-45509359 Setaria italica
Seita.5G438500 10.0kb upstream 10.0kb upstream 14756 true scaffold_5: 45489604-45504359 Setaria italica
Seita.5G438500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 45489604-45499603 Setaria italica
Seita.5G438500 10.0kb downstream 10.0kb downstream 14756 true scaffold_5: 45499604-45514359 Setaria italica
Seita.5G438500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 45504360-45514359 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041391 5273 Angiosperm View MSA
122185035 5267 Panicoideae View MSA
124588556 5269 Grass View MSA
121345968 5274 Embryophyte View MSA
123425658 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.348        
cufflinks 9.406        
cufflinks 6.835        
cufflinks 9.159        
cufflinks 7.604        
cufflinks 8.524        
cufflinks 8.345        
cufflinks 6.68        
cufflinks 7.06        
cufflinks 6.933        
cufflinks 6.264       Low
cufflinks 11.22       High
cufflinks 8.946        
cufflinks 6.009       Low
cufflinks 7.395        
cufflinks 8.354        
cufflinks 10.062       High
cufflinks 12.484     High High
cufflinks 6.704        
cufflinks 8.465        

0 Strain