Gene : Seita.5G437000 S. italica v2.2
Defline:  (1 of 2) 2.2.1.2 - Transaldolase / Glycerone transferase Genomic Order:  4370
Name:  ? Seita.5G437000 Secondary Identifier:  ? PAC:32684864
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica NONOXIPENT-PWY Setaria italica pathologic  
Sitalica PENTOSE-P-PWY Setaria italica pathologic  
Sitalica PWY-5723 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G437000 0.5kb upstream 0.5kb upstream 3532 true scaffold_5: 45396470-45400001 Setaria italica
Seita.5G437000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 45399502-45400001 Setaria italica
Seita.5G437000 0.5kb downstream 0.5kb downstream 3532 true scaffold_5: 45395970-45399501 Setaria italica
Seita.5G437000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 45395970-45396469 Setaria italica
Seita.5G437000 1.0kb upstream 1.0kb upstream 4032 true scaffold_5: 45396470-45400501 Setaria italica
Seita.5G437000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 45399502-45400501 Setaria italica
Seita.5G437000 1.0kb downstream 1.0kb downstream 4032 true scaffold_5: 45395470-45399501 Setaria italica
Seita.5G437000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 45395470-45396469 Setaria italica
Seita.5G437000 2.0kb upstream 2.0kb upstream 5032 true scaffold_5: 45396470-45401501 Setaria italica
Seita.5G437000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 45399502-45401501 Setaria italica
Seita.5G437000 2.0kb downstream 2.0kb downstream 5032 true scaffold_5: 45394470-45399501 Setaria italica
Seita.5G437000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 45394470-45396469 Setaria italica
Seita.5G437000 5.0kb upstream 5.0kb upstream 8032 true scaffold_5: 45396470-45404501 Setaria italica
Seita.5G437000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 45399502-45404501 Setaria italica
Seita.5G437000 5.0kb downstream 5.0kb downstream 8032 true scaffold_5: 45391470-45399501 Setaria italica
Seita.5G437000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 45391470-45396469 Setaria italica
Seita.5G437000 10.0kb upstream 10.0kb upstream 13032 true scaffold_5: 45396470-45409501 Setaria italica
Seita.5G437000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 45399502-45409501 Setaria italica
Seita.5G437000 10.0kb downstream 10.0kb downstream 13032 true scaffold_5: 45386470-45399501 Setaria italica
Seita.5G437000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 45386470-45396469 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189290 5267 Panicoideae View MSA
124574668 5269 Grass View MSA
122044911 5273 Angiosperm View MSA
121343866 5274 Embryophyte View MSA
123379934 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 97.863     High  
cufflinks 101.578     High  
cufflinks 63.575     High Low
cufflinks 46.106     High Low
cufflinks 95.876     High  
cufflinks 108.462     High  
cufflinks 96.743     High  
cufflinks 103.164     High  
cufflinks 109.217     High  
cufflinks 134.278     High  
cufflinks 136.605     High  
cufflinks 174.346     High  
cufflinks 202.686     High High
cufflinks 150.949     High  
cufflinks 212.841     High High
cufflinks 47.134     High Low
cufflinks 282.385     High High
cufflinks 76.854     High  
cufflinks 88.193     High  
cufflinks 259.74     High High

0 Strain