Gene : Seita.5G446700 S. italica v2.2
Genomic Order:  4467 Name:  ? Seita.5G446700
Secondary Identifier:  ? PAC:32681484
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G446700 0.5kb upstream 0.5kb upstream 1924 true scaffold_5: 45923947-45925870 Setaria italica
Seita.5G446700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 45925371-45925870 Setaria italica
Seita.5G446700 0.5kb downstream 0.5kb downstream 1924 true scaffold_5: 45923447-45925370 Setaria italica
Seita.5G446700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 45923447-45923946 Setaria italica
Seita.5G446700 1.0kb upstream 1.0kb upstream 2424 true scaffold_5: 45923947-45926370 Setaria italica
Seita.5G446700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 45925371-45926370 Setaria italica
Seita.5G446700 1.0kb downstream 1.0kb downstream 2424 true scaffold_5: 45922947-45925370 Setaria italica
Seita.5G446700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 45922947-45923946 Setaria italica
Seita.5G446700 2.0kb upstream 2.0kb upstream 3424 true scaffold_5: 45923947-45927370 Setaria italica
Seita.5G446700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 45925371-45927370 Setaria italica
Seita.5G446700 2.0kb downstream 2.0kb downstream 3424 true scaffold_5: 45921947-45925370 Setaria italica
Seita.5G446700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 45921947-45923946 Setaria italica
Seita.5G446700 5.0kb upstream 5.0kb upstream 6424 true scaffold_5: 45923947-45930370 Setaria italica
Seita.5G446700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 45925371-45930370 Setaria italica
Seita.5G446700 5.0kb downstream 5.0kb downstream 6424 true scaffold_5: 45918947-45925370 Setaria italica
Seita.5G446700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 45918947-45923946 Setaria italica
Seita.5G446700 10.0kb upstream 10.0kb upstream 11424 true scaffold_5: 45923947-45935370 Setaria italica
Seita.5G446700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 45925371-45935370 Setaria italica
Seita.5G446700 10.0kb downstream 10.0kb downstream 11424 true scaffold_5: 45913947-45925370 Setaria italica
Seita.5G446700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 45913947-45923946 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041158 5273 Angiosperm View MSA
122177723 5267 Panicoideae View MSA
124579828 5269 Grass View MSA
121309806 5274 Embryophyte View MSA
123347460 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.879        
cufflinks 3.747       High
cufflinks 0.048     Low Low
cufflinks 0.089        
cufflinks 0.206        
cufflinks 4.83       High
cufflinks 2.125       High
cufflinks 1.859        
cufflinks 1.203        
cufflinks 3.217       High
cufflinks 2.577       High
cufflinks 0.023     Low Low
cufflinks 0.234        
cufflinks 0.093     Low  
cufflinks 0.053     Low Low
cufflinks 0.594        
cufflinks 0.052     Low Low
cufflinks 0.195        
cufflinks 0.358        
cufflinks 0.025     Low Low

0 Strain