Gene : Seita.5G447900 S. italica v2.2
Genomic Order:  4479 Name:  ? Seita.5G447900
Secondary Identifier:  ? PAC:32683478
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G447900 0.5kb upstream 0.5kb upstream 2011 true scaffold_5: 46030030-46032040 Setaria italica
Seita.5G447900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46030030-46030529 Setaria italica
Seita.5G447900 0.5kb downstream 0.5kb downstream 2011 true scaffold_5: 46030530-46032540 Setaria italica
Seita.5G447900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46032041-46032540 Setaria italica
Seita.5G447900 1.0kb upstream 1.0kb upstream 2511 true scaffold_5: 46029530-46032040 Setaria italica
Seita.5G447900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46029530-46030529 Setaria italica
Seita.5G447900 1.0kb downstream 1.0kb downstream 2511 true scaffold_5: 46030530-46033040 Setaria italica
Seita.5G447900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46032041-46033040 Setaria italica
Seita.5G447900 2.0kb upstream 2.0kb upstream 3511 true scaffold_5: 46028530-46032040 Setaria italica
Seita.5G447900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46028530-46030529 Setaria italica
Seita.5G447900 2.0kb downstream 2.0kb downstream 3511 true scaffold_5: 46030530-46034040 Setaria italica
Seita.5G447900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46032041-46034040 Setaria italica
Seita.5G447900 5.0kb upstream 5.0kb upstream 6511 true scaffold_5: 46025530-46032040 Setaria italica
Seita.5G447900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46025530-46030529 Setaria italica
Seita.5G447900 5.0kb downstream 5.0kb downstream 6511 true scaffold_5: 46030530-46037040 Setaria italica
Seita.5G447900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46032041-46037040 Setaria italica
Seita.5G447900 10.0kb upstream 10.0kb upstream 11511 true scaffold_5: 46020530-46032040 Setaria italica
Seita.5G447900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46020530-46030529 Setaria italica
Seita.5G447900 10.0kb downstream 10.0kb downstream 11511 true scaffold_5: 46030530-46042040 Setaria italica
Seita.5G447900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46032041-46042040 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195507 5267 Panicoideae View MSA
124588199 5269 Grass View MSA
122044964 5273 Angiosperm View MSA
121310373 5274 Embryophyte View MSA
123347874 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.96        
cufflinks 5.918        
cufflinks 12.759     High  
cufflinks 15.754     High  
cufflinks 22.165     High  
cufflinks 7.444        
cufflinks 16.36     High  
cufflinks 29.212     High High
cufflinks 33.203     High High
cufflinks 9.455        
cufflinks 4.274        
cufflinks 0.392       Low
cufflinks 2.145        
cufflinks 14.022     High  
cufflinks 0.471       Low
cufflinks 19.431     High  
cufflinks 0.581       Low
cufflinks 14.246     High  
cufflinks 9.262        
cufflinks 0.817       Low

0 Strain