Gene : Seita.5G448100 S. italica v2.2
Defline:  (1 of 1) PTHR32440:SF11 - INACTIVE PURPLE ACID PHOSPHATASE 16-RELATED Genomic Order:  4481
Name:  ? Seita.5G448100 Secondary Identifier:  ? PAC:32686373
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G448100 0.5kb upstream 0.5kb upstream 2567 true scaffold_5: 46045063-46047629 Setaria italica
Seita.5G448100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46047130-46047629 Setaria italica
Seita.5G448100 0.5kb downstream 0.5kb downstream 2567 true scaffold_5: 46044563-46047129 Setaria italica
Seita.5G448100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46044563-46045062 Setaria italica
Seita.5G448100 1.0kb upstream 1.0kb upstream 3067 true scaffold_5: 46045063-46048129 Setaria italica
Seita.5G448100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46047130-46048129 Setaria italica
Seita.5G448100 1.0kb downstream 1.0kb downstream 3067 true scaffold_5: 46044063-46047129 Setaria italica
Seita.5G448100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46044063-46045062 Setaria italica
Seita.5G448100 2.0kb upstream 2.0kb upstream 4067 true scaffold_5: 46045063-46049129 Setaria italica
Seita.5G448100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46047130-46049129 Setaria italica
Seita.5G448100 2.0kb downstream 2.0kb downstream 4067 true scaffold_5: 46043063-46047129 Setaria italica
Seita.5G448100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46043063-46045062 Setaria italica
Seita.5G448100 5.0kb upstream 5.0kb upstream 7067 true scaffold_5: 46045063-46052129 Setaria italica
Seita.5G448100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46047130-46052129 Setaria italica
Seita.5G448100 5.0kb downstream 5.0kb downstream 7067 true scaffold_5: 46040063-46047129 Setaria italica
Seita.5G448100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46040063-46045062 Setaria italica
Seita.5G448100 10.0kb upstream 10.0kb upstream 12067 true scaffold_5: 46045063-46057129 Setaria italica
Seita.5G448100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46047130-46057129 Setaria italica
Seita.5G448100 10.0kb downstream 10.0kb downstream 12067 true scaffold_5: 46035063-46047129 Setaria italica
Seita.5G448100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46035063-46045062 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176290 5267 Panicoideae View MSA
124577063 5269 Grass View MSA
122049015 5273 Angiosperm View MSA
121345612 5274 Embryophyte View MSA
123380244 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.912        
cufflinks 15.275     High High
cufflinks 0.291       Low
cufflinks 0.532       Low
cufflinks 0.889        
cufflinks 14.029     High High
cufflinks 3.701        
cufflinks 2.115        
cufflinks 2.399        
cufflinks 1.163        
cufflinks 1.507        
cufflinks 31.737     High High
cufflinks 7.246        
cufflinks 1.336        
cufflinks 3.82        
cufflinks 1.067        
cufflinks 12.227       High
cufflinks 0.804        
cufflinks 1.818        
cufflinks 42.04     High High

0 Strain