Gene : Seita.5G450800 S. italica v2.2
Defline:  (1 of 1) 1.5.1.2 - Pyrroline-5-carboxylate reductase / P5CR Genomic Order:  4508
Name:  ? Seita.5G450800 Secondary Identifier:  ? PAC:32682060
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ARG-PRO-PWY Setaria italica pathologic  
Sitalica PROSYN-PWY Setaria italica pathologic  
Sitalica PWY-3341 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G450800 0.5kb upstream 0.5kb upstream 3220 true scaffold_5: 46173312-46176531 Setaria italica
Seita.5G450800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46176032-46176531 Setaria italica
Seita.5G450800 0.5kb downstream 0.5kb downstream 3220 true scaffold_5: 46172812-46176031 Setaria italica
Seita.5G450800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46172812-46173311 Setaria italica
Seita.5G450800 1.0kb upstream 1.0kb upstream 3720 true scaffold_5: 46173312-46177031 Setaria italica
Seita.5G450800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46176032-46177031 Setaria italica
Seita.5G450800 1.0kb downstream 1.0kb downstream 3720 true scaffold_5: 46172312-46176031 Setaria italica
Seita.5G450800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46172312-46173311 Setaria italica
Seita.5G450800 2.0kb upstream 2.0kb upstream 4720 true scaffold_5: 46173312-46178031 Setaria italica
Seita.5G450800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46176032-46178031 Setaria italica
Seita.5G450800 2.0kb downstream 2.0kb downstream 4720 true scaffold_5: 46171312-46176031 Setaria italica
Seita.5G450800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46171312-46173311 Setaria italica
Seita.5G450800 5.0kb upstream 5.0kb upstream 7720 true scaffold_5: 46173312-46181031 Setaria italica
Seita.5G450800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46176032-46181031 Setaria italica
Seita.5G450800 5.0kb downstream 5.0kb downstream 7720 true scaffold_5: 46168312-46176031 Setaria italica
Seita.5G450800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46168312-46173311 Setaria italica
Seita.5G450800 10.0kb upstream 10.0kb upstream 12720 true scaffold_5: 46173312-46186031 Setaria italica
Seita.5G450800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46176032-46186031 Setaria italica
Seita.5G450800 10.0kb downstream 10.0kb downstream 12720 true scaffold_5: 46163312-46176031 Setaria italica
Seita.5G450800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46163312-46173311 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185898 5267 Panicoideae View MSA
124579215 5269 Grass View MSA
122043656 5273 Angiosperm View MSA
123428906 5275 Viridiplantae View MSA
121346927 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.87        
cufflinks 5.143        
cufflinks 3.716        
cufflinks 3.258        
cufflinks 3.488        
cufflinks 5.127        
cufflinks 3.624        
cufflinks 6.575       High
cufflinks 4.505        
cufflinks 4.83        
cufflinks 2.763        
cufflinks 3.527        
cufflinks 3.394        
cufflinks 6.169       High
cufflinks 3.69        
cufflinks 2.079       Low
cufflinks 4.06        
cufflinks 1.772       Low
cufflinks 3.614        
cufflinks 4.177        

0 Strain