Gene : Seita.5G450100 S. italica v2.2
Defline:  (1 of 2) PTHR13451:SF0 - CROSSOVER JUNCTION ENDONUCLEASE MUS81 Genomic Order:  4501
Name:  ? Seita.5G450100 Secondary Identifier:  ? PAC:32684854
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G450100 0.5kb upstream 0.5kb upstream 4939 true scaffold_5: 46133203-46138141 Setaria italica
Seita.5G450100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46133203-46133702 Setaria italica
Seita.5G450100 0.5kb downstream 0.5kb downstream 4939 true scaffold_5: 46133703-46138641 Setaria italica
Seita.5G450100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46138142-46138641 Setaria italica
Seita.5G450100 1.0kb upstream 1.0kb upstream 5439 true scaffold_5: 46132703-46138141 Setaria italica
Seita.5G450100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46132703-46133702 Setaria italica
Seita.5G450100 1.0kb downstream 1.0kb downstream 5439 true scaffold_5: 46133703-46139141 Setaria italica
Seita.5G450100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46138142-46139141 Setaria italica
Seita.5G450100 2.0kb upstream 2.0kb upstream 6439 true scaffold_5: 46131703-46138141 Setaria italica
Seita.5G450100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46131703-46133702 Setaria italica
Seita.5G450100 2.0kb downstream 2.0kb downstream 6439 true scaffold_5: 46133703-46140141 Setaria italica
Seita.5G450100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46138142-46140141 Setaria italica
Seita.5G450100 5.0kb upstream 5.0kb upstream 9439 true scaffold_5: 46128703-46138141 Setaria italica
Seita.5G450100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46128703-46133702 Setaria italica
Seita.5G450100 5.0kb downstream 5.0kb downstream 9439 true scaffold_5: 46133703-46143141 Setaria italica
Seita.5G450100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46138142-46143141 Setaria italica
Seita.5G450100 10.0kb upstream 10.0kb upstream 14439 true scaffold_5: 46123703-46138141 Setaria italica
Seita.5G450100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46123703-46133702 Setaria italica
Seita.5G450100 10.0kb downstream 10.0kb downstream 14439 true scaffold_5: 46133703-46148141 Setaria italica
Seita.5G450100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46138142-46148141 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183777 5267 Panicoideae View MSA
124589323 5269 Grass View MSA
122048143 5273 Angiosperm View MSA
121345238 5274 Embryophyte View MSA
123425148 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.667        
cufflinks 1.488       High
cufflinks 0.282        
cufflinks 0.305        
cufflinks 0.211       Low
cufflinks 1.156        
cufflinks 0.877        
cufflinks 1.412       High
cufflinks 0.843        
cufflinks 1.062        
cufflinks 0.883        
cufflinks 1.495       High
cufflinks 0.618        
cufflinks 0.18       Low
cufflinks 1.213        
cufflinks 0.227       Low
cufflinks 1.258        
cufflinks 0.18       Low
cufflinks 0.163       Low
cufflinks 1.504       High

0 Strain