Gene : Seita.5G450200 S. italica v2.2
Defline:  (1 of 2) PTHR13451:SF0 - CROSSOVER JUNCTION ENDONUCLEASE MUS81 Genomic Order:  4502
Name:  ? Seita.5G450200 Secondary Identifier:  ? PAC:32683592
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G450200 0.5kb upstream 0.5kb upstream 9055 true scaffold_5: 46137931-46146985 Setaria italica
Seita.5G450200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46137931-46138430 Setaria italica
Seita.5G450200 0.5kb downstream 0.5kb downstream 9055 true scaffold_5: 46138431-46147485 Setaria italica
Seita.5G450200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46146986-46147485 Setaria italica
Seita.5G450200 1.0kb upstream 1.0kb upstream 9555 true scaffold_5: 46137431-46146985 Setaria italica
Seita.5G450200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46137431-46138430 Setaria italica
Seita.5G450200 1.0kb downstream 1.0kb downstream 9555 true scaffold_5: 46138431-46147985 Setaria italica
Seita.5G450200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46146986-46147985 Setaria italica
Seita.5G450200 2.0kb upstream 2.0kb upstream 10555 true scaffold_5: 46136431-46146985 Setaria italica
Seita.5G450200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46136431-46138430 Setaria italica
Seita.5G450200 2.0kb downstream 2.0kb downstream 10555 true scaffold_5: 46138431-46148985 Setaria italica
Seita.5G450200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46146986-46148985 Setaria italica
Seita.5G450200 5.0kb upstream 5.0kb upstream 13555 true scaffold_5: 46133431-46146985 Setaria italica
Seita.5G450200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46133431-46138430 Setaria italica
Seita.5G450200 5.0kb downstream 5.0kb downstream 13555 true scaffold_5: 46138431-46151985 Setaria italica
Seita.5G450200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46146986-46151985 Setaria italica
Seita.5G450200 10.0kb upstream 10.0kb upstream 18555 true scaffold_5: 46128431-46146985 Setaria italica
Seita.5G450200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46128431-46138430 Setaria italica
Seita.5G450200 10.0kb downstream 10.0kb downstream 18555 true scaffold_5: 46138431-46156985 Setaria italica
Seita.5G450200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46146986-46156985 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186520 5267 Panicoideae View MSA
124589323 5269 Grass View MSA
122048143 5273 Angiosperm View MSA
121345238 5274 Embryophyte View MSA
123425148 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.066     Low  
cufflinks 0.252       High
cufflinks 0.014     Low  
cufflinks 0.007     Low Low
cufflinks 0.004     Low Low
cufflinks 0.18       High
cufflinks 0.072     Low  
cufflinks 0.095     Low  
cufflinks 0.02     Low  
cufflinks 0.024     Low  
cufflinks 0.071     Low  
cufflinks 0.068     Low  
cufflinks 0.021     Low  
cufflinks 0.02     Low  
cufflinks 0.088     Low  
cufflinks 0.066     Low  
cufflinks 0.098     Low  
cufflinks 0.072     Low  
cufflinks 0.009     Low Low
cufflinks 0.094     Low  

0 Strain