Gene : Seita.5G453900 S. italica v2.2
Defline:  (1 of 1) PTHR13018:SF30 - EARLY-RESPONSIVE TO DEHYDRATION STRESS PROTEIN (ERD4) Genomic Order:  4539
Name:  ? Seita.5G453900 Secondary Identifier:  ? PAC:32685035
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G453900 0.5kb upstream 0.5kb upstream 5516 true scaffold_5: 46339551-46345066 Setaria italica
Seita.5G453900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46339551-46340050 Setaria italica
Seita.5G453900 0.5kb downstream 0.5kb downstream 5516 true scaffold_5: 46340051-46345566 Setaria italica
Seita.5G453900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46345067-46345566 Setaria italica
Seita.5G453900 1.0kb upstream 1.0kb upstream 6016 true scaffold_5: 46339051-46345066 Setaria italica
Seita.5G453900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46339051-46340050 Setaria italica
Seita.5G453900 1.0kb downstream 1.0kb downstream 6016 true scaffold_5: 46340051-46346066 Setaria italica
Seita.5G453900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46345067-46346066 Setaria italica
Seita.5G453900 2.0kb upstream 2.0kb upstream 7016 true scaffold_5: 46338051-46345066 Setaria italica
Seita.5G453900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46338051-46340050 Setaria italica
Seita.5G453900 2.0kb downstream 2.0kb downstream 7016 true scaffold_5: 46340051-46347066 Setaria italica
Seita.5G453900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46345067-46347066 Setaria italica
Seita.5G453900 5.0kb upstream 5.0kb upstream 10016 true scaffold_5: 46335051-46345066 Setaria italica
Seita.5G453900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46335051-46340050 Setaria italica
Seita.5G453900 5.0kb downstream 5.0kb downstream 10016 true scaffold_5: 46340051-46350066 Setaria italica
Seita.5G453900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46345067-46350066 Setaria italica
Seita.5G453900 10.0kb upstream 10.0kb upstream 15016 true scaffold_5: 46330051-46345066 Setaria italica
Seita.5G453900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46330051-46340050 Setaria italica
Seita.5G453900 10.0kb downstream 10.0kb downstream 15016 true scaffold_5: 46340051-46355066 Setaria italica
Seita.5G453900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46345067-46355066 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028759 5273 Angiosperm View MSA
122177601 5267 Panicoideae View MSA
124569007 5269 Grass View MSA
123429118 5275 Viridiplantae View MSA
121349616 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.16        
cufflinks 0.32       High
cufflinks 0.033     Low  
cufflinks 0.005     Low Low
cufflinks 0.038     Low  
cufflinks 0.25        
cufflinks 0.086     Low  
cufflinks 0.071     Low  
cufflinks 0.131        
cufflinks 0.504       High
cufflinks 0.283        
cufflinks 0.053     Low  
cufflinks 0.119     Low  
cufflinks 0.009     Low Low
cufflinks 0.152        
cufflinks 0.142        
cufflinks 0.115     Low  
cufflinks 0.176        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.112     Low  

0 Strain