Gene : Seita.5G456700 S. italica v2.2
Defline:  (1 of 1) PTHR31956:SF10 - NON-SPECIFIC PHOSPHOLIPASE C2 Genomic Order:  4567
Name:  ? Seita.5G456700 Secondary Identifier:  ? PAC:32686439
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica LIPASYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G456700 0.5kb upstream 0.5kb upstream 5542 true scaffold_5: 46543851-46549392 Setaria italica
Seita.5G456700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46548893-46549392 Setaria italica
Seita.5G456700 0.5kb downstream 0.5kb downstream 5542 true scaffold_5: 46543351-46548892 Setaria italica
Seita.5G456700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46543351-46543850 Setaria italica
Seita.5G456700 1.0kb upstream 1.0kb upstream 6042 true scaffold_5: 46543851-46549892 Setaria italica
Seita.5G456700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46548893-46549892 Setaria italica
Seita.5G456700 1.0kb downstream 1.0kb downstream 6042 true scaffold_5: 46542851-46548892 Setaria italica
Seita.5G456700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46542851-46543850 Setaria italica
Seita.5G456700 2.0kb upstream 2.0kb upstream 7042 true scaffold_5: 46543851-46550892 Setaria italica
Seita.5G456700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46548893-46550892 Setaria italica
Seita.5G456700 2.0kb downstream 2.0kb downstream 7042 true scaffold_5: 46541851-46548892 Setaria italica
Seita.5G456700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46541851-46543850 Setaria italica
Seita.5G456700 5.0kb upstream 5.0kb upstream 10042 true scaffold_5: 46543851-46553892 Setaria italica
Seita.5G456700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46548893-46553892 Setaria italica
Seita.5G456700 5.0kb downstream 5.0kb downstream 10042 true scaffold_5: 46538851-46548892 Setaria italica
Seita.5G456700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46538851-46543850 Setaria italica
Seita.5G456700 10.0kb upstream 10.0kb upstream 15042 true scaffold_5: 46543851-46558892 Setaria italica
Seita.5G456700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46548893-46558892 Setaria italica
Seita.5G456700 10.0kb downstream 10.0kb downstream 15042 true scaffold_5: 46533851-46548892 Setaria italica
Seita.5G456700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46533851-46543850 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188321 5267 Panicoideae View MSA
124568850 5269 Grass View MSA
122048233 5273 Angiosperm View MSA
121345811 5274 Embryophyte View MSA
123380272 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.058        
cufflinks 1.142        
cufflinks 0.411       Low
cufflinks 0.48       Low
cufflinks 2.253        
cufflinks 1.048        
cufflinks 2.27        
cufflinks 5.177        
cufflinks 3.599        
cufflinks 4.288        
cufflinks 5.473       High
cufflinks 2.472        
cufflinks 8.033       High
cufflinks 0.825       Low
cufflinks 4.42        
cufflinks 1.516        
cufflinks 3.081        
cufflinks 2.566        
cufflinks 0.499       Low
cufflinks 4.437        

0 Strain