Gene : Seita.5G459800 S. italica v2.2
Defline:  (1 of 7) PF01823 - MAC/Perforin domain (MACPF) Genomic Order:  4598
Name:  ? Seita.5G459800 Secondary Identifier:  ? PAC:32684757
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G459800 0.5kb upstream 0.5kb upstream 5425 true scaffold_5: 46726710-46732134 Setaria italica
Seita.5G459800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46726710-46727209 Setaria italica
Seita.5G459800 0.5kb downstream 0.5kb downstream 5425 true scaffold_5: 46727210-46732634 Setaria italica
Seita.5G459800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46732135-46732634 Setaria italica
Seita.5G459800 1.0kb upstream 1.0kb upstream 5925 true scaffold_5: 46726210-46732134 Setaria italica
Seita.5G459800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46726210-46727209 Setaria italica
Seita.5G459800 1.0kb downstream 1.0kb downstream 5925 true scaffold_5: 46727210-46733134 Setaria italica
Seita.5G459800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46732135-46733134 Setaria italica
Seita.5G459800 2.0kb upstream 2.0kb upstream 6925 true scaffold_5: 46725210-46732134 Setaria italica
Seita.5G459800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46725210-46727209 Setaria italica
Seita.5G459800 2.0kb downstream 2.0kb downstream 6925 true scaffold_5: 46727210-46734134 Setaria italica
Seita.5G459800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46732135-46734134 Setaria italica
Seita.5G459800 5.0kb upstream 5.0kb upstream 9925 true scaffold_5: 46722210-46732134 Setaria italica
Seita.5G459800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46722210-46727209 Setaria italica
Seita.5G459800 5.0kb downstream 5.0kb downstream 9925 true scaffold_5: 46727210-46737134 Setaria italica
Seita.5G459800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46732135-46737134 Setaria italica
Seita.5G459800 10.0kb upstream 10.0kb upstream 14925 true scaffold_5: 46717210-46732134 Setaria italica
Seita.5G459800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46717210-46727209 Setaria italica
Seita.5G459800 10.0kb downstream 10.0kb downstream 14925 true scaffold_5: 46727210-46742134 Setaria italica
Seita.5G459800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46732135-46742134 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176853 5267 Panicoideae View MSA
124588584 5269 Grass View MSA
122047802 5273 Angiosperm View MSA
121349025 5274 Embryophyte View MSA
123381129 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.067        
cufflinks 16.568     High  
cufflinks 26.241     High High
cufflinks 21.375     High  
cufflinks 21.474     High  
cufflinks 17.332     High  
cufflinks 11.063       Low
cufflinks 13.072        
cufflinks 11.337       Low
cufflinks 10.637       Low
cufflinks 17.672     High  
cufflinks 20.88     High  
cufflinks 21.235     High  
cufflinks 25.398     High High
cufflinks 27.16     High High
cufflinks 9.982       Low
cufflinks 19.686     High  
cufflinks 10.704       Low
cufflinks 17.565     High  
cufflinks 18.522     High  

0 Strain