Gene : Seita.5G460100 S. italica v2.2
Defline:  (1 of 1) PTHR10073:SF40 - DNA MISMATCH REPAIR PROTEIN MLH1 Genomic Order:  4601
Name:  ? Seita.5G460100 Secondary Identifier:  ? PAC:32683448
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G460100 0.5kb upstream 0.5kb upstream 7008 true scaffold_5: 46741924-46748931 Setaria italica
Seita.5G460100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46741924-46742423 Setaria italica
Seita.5G460100 0.5kb downstream 0.5kb downstream 7008 true scaffold_5: 46742424-46749431 Setaria italica
Seita.5G460100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46748932-46749431 Setaria italica
Seita.5G460100 1.0kb upstream 1.0kb upstream 7508 true scaffold_5: 46741424-46748931 Setaria italica
Seita.5G460100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46741424-46742423 Setaria italica
Seita.5G460100 1.0kb downstream 1.0kb downstream 7508 true scaffold_5: 46742424-46749931 Setaria italica
Seita.5G460100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46748932-46749931 Setaria italica
Seita.5G460100 2.0kb upstream 2.0kb upstream 8508 true scaffold_5: 46740424-46748931 Setaria italica
Seita.5G460100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46740424-46742423 Setaria italica
Seita.5G460100 2.0kb downstream 2.0kb downstream 8508 true scaffold_5: 46742424-46750931 Setaria italica
Seita.5G460100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46748932-46750931 Setaria italica
Seita.5G460100 5.0kb upstream 5.0kb upstream 11508 true scaffold_5: 46737424-46748931 Setaria italica
Seita.5G460100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46737424-46742423 Setaria italica
Seita.5G460100 5.0kb downstream 5.0kb downstream 11508 true scaffold_5: 46742424-46753931 Setaria italica
Seita.5G460100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46748932-46753931 Setaria italica
Seita.5G460100 10.0kb upstream 10.0kb upstream 16508 true scaffold_5: 46732424-46748931 Setaria italica
Seita.5G460100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46732424-46742423 Setaria italica
Seita.5G460100 10.0kb downstream 10.0kb downstream 16508 true scaffold_5: 46742424-46758931 Setaria italica
Seita.5G460100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46748932-46758931 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196805 5267 Panicoideae View MSA
124570850 5269 Grass View MSA
122045945 5273 Angiosperm View MSA
121345216 5274 Embryophyte View MSA
123426273 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.804        
cufflinks 4.847       High
cufflinks 1.755        
cufflinks 1.077       Low
cufflinks 1.053       Low
cufflinks 5.565       High
cufflinks 2.526        
cufflinks 2.902        
cufflinks 2.238        
cufflinks 1.316       Low
cufflinks 2.925        
cufflinks 2.942        
cufflinks 2.936        
cufflinks 1.824        
cufflinks 3.74        
cufflinks 2.897        
cufflinks 4.146       High
cufflinks 1.941        
cufflinks 0.808       Low
cufflinks 3.364        

0 Strain