Gene : Seita.5G459300 S. italica v2.2
Defline:  (1 of 2) PTHR24056//PTHR24056:SF187 - CELL DIVISION PROTEIN KINASE Genomic Order:  4593
Name:  ? Seita.5G459300 Secondary Identifier:  ? PAC:32684020
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G459300 0.5kb upstream 0.5kb upstream 3634 true scaffold_5: 46698475-46702108 Setaria italica
Seita.5G459300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46698475-46698974 Setaria italica
Seita.5G459300 0.5kb downstream 0.5kb downstream 3634 true scaffold_5: 46698975-46702608 Setaria italica
Seita.5G459300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46702109-46702608 Setaria italica
Seita.5G459300 1.0kb upstream 1.0kb upstream 4134 true scaffold_5: 46697975-46702108 Setaria italica
Seita.5G459300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46697975-46698974 Setaria italica
Seita.5G459300 1.0kb downstream 1.0kb downstream 4134 true scaffold_5: 46698975-46703108 Setaria italica
Seita.5G459300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46702109-46703108 Setaria italica
Seita.5G459300 2.0kb upstream 2.0kb upstream 5134 true scaffold_5: 46696975-46702108 Setaria italica
Seita.5G459300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46696975-46698974 Setaria italica
Seita.5G459300 2.0kb downstream 2.0kb downstream 5134 true scaffold_5: 46698975-46704108 Setaria italica
Seita.5G459300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46702109-46704108 Setaria italica
Seita.5G459300 5.0kb upstream 5.0kb upstream 8134 true scaffold_5: 46693975-46702108 Setaria italica
Seita.5G459300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46693975-46698974 Setaria italica
Seita.5G459300 5.0kb downstream 5.0kb downstream 8134 true scaffold_5: 46698975-46707108 Setaria italica
Seita.5G459300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46702109-46707108 Setaria italica
Seita.5G459300 10.0kb upstream 10.0kb upstream 13134 true scaffold_5: 46688975-46702108 Setaria italica
Seita.5G459300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46688975-46698974 Setaria italica
Seita.5G459300 10.0kb downstream 10.0kb downstream 13134 true scaffold_5: 46698975-46712108 Setaria italica
Seita.5G459300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46702109-46712108 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179810 5267 Panicoideae View MSA
124577566 5269 Grass View MSA
122043728 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121346780 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.104     High  
cufflinks 49.914     High  
cufflinks 48.672     High  
cufflinks 58.073     High High
cufflinks 51.542     High  
cufflinks 50.522     High  
cufflinks 38.255     High Low
cufflinks 42.615     High  
cufflinks 51.076     High  
cufflinks 33.603     High Low
cufflinks 40.689     High  
cufflinks 48.354     High  
cufflinks 54.246     High High
cufflinks 44.179     High  
cufflinks 51.14     High  
cufflinks 34.743     High Low
cufflinks 52.55     High  
cufflinks 42.131     High  
cufflinks 49.606     High  
cufflinks 51.215     High  

0 Strain