Gene : Seita.5G461200 S. italica v2.2
Defline:  (1 of 2) PTHR12388 - MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE Genomic Order:  4612
Name:  ? Seita.5G461200 Secondary Identifier:  ? PAC:32684718
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G461200 0.5kb upstream 0.5kb upstream 2590 true scaffold_5: 46801232-46803821 Setaria italica
Seita.5G461200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46803322-46803821 Setaria italica
Seita.5G461200 0.5kb downstream 0.5kb downstream 2590 true scaffold_5: 46800732-46803321 Setaria italica
Seita.5G461200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46800732-46801231 Setaria italica
Seita.5G461200 1.0kb upstream 1.0kb upstream 3090 true scaffold_5: 46801232-46804321 Setaria italica
Seita.5G461200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46803322-46804321 Setaria italica
Seita.5G461200 1.0kb downstream 1.0kb downstream 3090 true scaffold_5: 46800232-46803321 Setaria italica
Seita.5G461200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46800232-46801231 Setaria italica
Seita.5G461200 2.0kb upstream 2.0kb upstream 4090 true scaffold_5: 46801232-46805321 Setaria italica
Seita.5G461200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46803322-46805321 Setaria italica
Seita.5G461200 2.0kb downstream 2.0kb downstream 4090 true scaffold_5: 46799232-46803321 Setaria italica
Seita.5G461200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46799232-46801231 Setaria italica
Seita.5G461200 5.0kb upstream 5.0kb upstream 7090 true scaffold_5: 46801232-46808321 Setaria italica
Seita.5G461200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46803322-46808321 Setaria italica
Seita.5G461200 5.0kb downstream 5.0kb downstream 7090 true scaffold_5: 46796232-46803321 Setaria italica
Seita.5G461200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46796232-46801231 Setaria italica
Seita.5G461200 10.0kb upstream 10.0kb upstream 12090 true scaffold_5: 46801232-46813321 Setaria italica
Seita.5G461200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46803322-46813321 Setaria italica
Seita.5G461200 10.0kb downstream 10.0kb downstream 12090 true scaffold_5: 46791232-46803321 Setaria italica
Seita.5G461200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46791232-46801231 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199579 5267 Panicoideae View MSA
124582049 5269 Grass View MSA
122051009 5273 Angiosperm View MSA
121349876 5274 Embryophyte View MSA
123426047 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.255        
cufflinks 3.041       Low
cufflinks 2.886       Low
cufflinks 5.59        
cufflinks 5.962        
cufflinks 3.431       Low
cufflinks 2.894       Low
cufflinks 6.39        
cufflinks 4.192        
cufflinks 8.013       High
cufflinks 3.504       Low
cufflinks 9.365       High
cufflinks 6.302        
cufflinks 5.565        
cufflinks 5.548        
cufflinks 4.393        
cufflinks 9.536       High
cufflinks 11.772     High High
cufflinks 4.871        
cufflinks 6.928        

0 Strain