Gene : Seita.5G462300 S. italica v2.2
Defline:  (1 of 1) PTHR13483:SF3 - BOX C/D SNORNA PROTEIN 1 Genomic Order:  4623
Name:  ? Seita.5G462300 Secondary Identifier:  ? PAC:32684720
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G462300 0.5kb upstream 0.5kb upstream 3988 true scaffold_5: 46843142-46847129 Setaria italica
Seita.5G462300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46846630-46847129 Setaria italica
Seita.5G462300 0.5kb downstream 0.5kb downstream 3988 true scaffold_5: 46842642-46846629 Setaria italica
Seita.5G462300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46842642-46843141 Setaria italica
Seita.5G462300 1.0kb upstream 1.0kb upstream 4488 true scaffold_5: 46843142-46847629 Setaria italica
Seita.5G462300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46846630-46847629 Setaria italica
Seita.5G462300 1.0kb downstream 1.0kb downstream 4488 true scaffold_5: 46842142-46846629 Setaria italica
Seita.5G462300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46842142-46843141 Setaria italica
Seita.5G462300 2.0kb upstream 2.0kb upstream 5488 true scaffold_5: 46843142-46848629 Setaria italica
Seita.5G462300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46846630-46848629 Setaria italica
Seita.5G462300 2.0kb downstream 2.0kb downstream 5488 true scaffold_5: 46841142-46846629 Setaria italica
Seita.5G462300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46841142-46843141 Setaria italica
Seita.5G462300 5.0kb upstream 5.0kb upstream 8488 true scaffold_5: 46843142-46851629 Setaria italica
Seita.5G462300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46846630-46851629 Setaria italica
Seita.5G462300 5.0kb downstream 5.0kb downstream 8488 true scaffold_5: 46838142-46846629 Setaria italica
Seita.5G462300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46838142-46843141 Setaria italica
Seita.5G462300 10.0kb upstream 10.0kb upstream 13488 true scaffold_5: 46843142-46856629 Setaria italica
Seita.5G462300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46846630-46856629 Setaria italica
Seita.5G462300 10.0kb downstream 10.0kb downstream 13488 true scaffold_5: 46833142-46846629 Setaria italica
Seita.5G462300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46833142-46843141 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195717 5267 Panicoideae View MSA
124570464 5269 Grass View MSA
122043413 5273 Angiosperm View MSA
121347000 5274 Embryophyte View MSA
123426353 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.512        
cufflinks 2.117        
cufflinks 1.0        
cufflinks 0.287       Low
cufflinks 0.838        
cufflinks 2.578       High
cufflinks 1.098        
cufflinks 1.295        
cufflinks 1.94        
cufflinks 2.165        
cufflinks 1.813        
cufflinks 1.962        
cufflinks 1.37        
cufflinks 1.592        
cufflinks 2.241        
cufflinks 1.265        
cufflinks 2.806       High
cufflinks 1.507        
cufflinks 0.525       Low
cufflinks 2.099        

0 Strain