Gene : Seita.5G460600 S. italica v2.2
Defline:  (1 of 1) PF11910 - Cyanobacterial and plant NDH-1 subunit O (NdhO) Genomic Order:  4606
Name:  ? Seita.5G460600 Secondary Identifier:  ? PAC:32684513
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G460600 0.5kb upstream 0.5kb upstream 2097 true scaffold_5: 46767660-46769756 Setaria italica
Seita.5G460600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46767660-46768159 Setaria italica
Seita.5G460600 0.5kb downstream 0.5kb downstream 2097 true scaffold_5: 46768160-46770256 Setaria italica
Seita.5G460600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46769757-46770256 Setaria italica
Seita.5G460600 1.0kb upstream 1.0kb upstream 2597 true scaffold_5: 46767160-46769756 Setaria italica
Seita.5G460600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46767160-46768159 Setaria italica
Seita.5G460600 1.0kb downstream 1.0kb downstream 2597 true scaffold_5: 46768160-46770756 Setaria italica
Seita.5G460600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46769757-46770756 Setaria italica
Seita.5G460600 2.0kb upstream 2.0kb upstream 3597 true scaffold_5: 46766160-46769756 Setaria italica
Seita.5G460600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46766160-46768159 Setaria italica
Seita.5G460600 2.0kb downstream 2.0kb downstream 3597 true scaffold_5: 46768160-46771756 Setaria italica
Seita.5G460600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46769757-46771756 Setaria italica
Seita.5G460600 5.0kb upstream 5.0kb upstream 6597 true scaffold_5: 46763160-46769756 Setaria italica
Seita.5G460600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46763160-46768159 Setaria italica
Seita.5G460600 5.0kb downstream 5.0kb downstream 6597 true scaffold_5: 46768160-46774756 Setaria italica
Seita.5G460600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46769757-46774756 Setaria italica
Seita.5G460600 10.0kb upstream 10.0kb upstream 11597 true scaffold_5: 46758160-46769756 Setaria italica
Seita.5G460600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46758160-46768159 Setaria italica
Seita.5G460600 10.0kb downstream 10.0kb downstream 11597 true scaffold_5: 46768160-46779756 Setaria italica
Seita.5G460600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46769757-46779756 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189886 5267 Panicoideae View MSA
124568380 5269 Grass View MSA
122043742 5273 Angiosperm View MSA
121347549 5274 Embryophyte View MSA
123380569 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.558        
cufflinks 3.43        
cufflinks 13.414     High  
cufflinks 23.086     High  
cufflinks 37.976     High High
cufflinks 3.672        
cufflinks 20.766     High  
cufflinks 46.599     High High
cufflinks 40.478     High High
cufflinks 3.77        
cufflinks 1.69        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.083     Low Low
cufflinks 8.407        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 12.405     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.28       Low
cufflinks 11.698     High  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain