Gene : Seita.5G465000 S. italica v2.2
Defline:  (1 of 2) PTHR13904 - PRE-MRNA SPLICING FACTOR PRP31 Genomic Order:  4650
Name:  ? Seita.5G465000 Secondary Identifier:  ? PAC:32686179
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G465000 0.5kb upstream 0.5kb upstream 8817 true scaffold_5: 46965309-46974125 Setaria italica
Seita.5G465000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46973626-46974125 Setaria italica
Seita.5G465000 0.5kb downstream 0.5kb downstream 8817 true scaffold_5: 46964809-46973625 Setaria italica
Seita.5G465000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46964809-46965308 Setaria italica
Seita.5G465000 1.0kb upstream 1.0kb upstream 9317 true scaffold_5: 46965309-46974625 Setaria italica
Seita.5G465000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46973626-46974625 Setaria italica
Seita.5G465000 1.0kb downstream 1.0kb downstream 9317 true scaffold_5: 46964309-46973625 Setaria italica
Seita.5G465000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46964309-46965308 Setaria italica
Seita.5G465000 2.0kb upstream 2.0kb upstream 10317 true scaffold_5: 46965309-46975625 Setaria italica
Seita.5G465000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46973626-46975625 Setaria italica
Seita.5G465000 2.0kb downstream 2.0kb downstream 10317 true scaffold_5: 46963309-46973625 Setaria italica
Seita.5G465000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46963309-46965308 Setaria italica
Seita.5G465000 5.0kb upstream 5.0kb upstream 13317 true scaffold_5: 46965309-46978625 Setaria italica
Seita.5G465000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46973626-46978625 Setaria italica
Seita.5G465000 5.0kb downstream 5.0kb downstream 13317 true scaffold_5: 46960309-46973625 Setaria italica
Seita.5G465000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46960309-46965308 Setaria italica
Seita.5G465000 10.0kb upstream 10.0kb upstream 18317 true scaffold_5: 46965309-46983625 Setaria italica
Seita.5G465000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46973626-46983625 Setaria italica
Seita.5G465000 10.0kb downstream 10.0kb downstream 18317 true scaffold_5: 46955309-46973625 Setaria italica
Seita.5G465000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46955309-46965308 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177206 5267 Panicoideae View MSA
124574565 5269 Grass View MSA
122045972 5273 Angiosperm View MSA
123428992 5275 Viridiplantae View MSA
121345979 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.535       High
cufflinks 8.269        
cufflinks 8.049        
cufflinks 6.905        
cufflinks 6.088       Low
cufflinks 9.183        
cufflinks 7.375        
cufflinks 8.571        
cufflinks 6.767        
cufflinks 8.685        
cufflinks 9.269        
cufflinks 9.488        
cufflinks 7.833        
cufflinks 5.501       Low
cufflinks 8.448        
cufflinks 9.358        
cufflinks 9.998        
cufflinks 13.772     High High
cufflinks 5.739       Low
cufflinks 8.939        

0 Strain