Gene : Seita.5G465300 S. italica v2.2
Defline:  (1 of 1) PTHR11851//PTHR11851:SF141 - METALLOPROTEASE Genomic Order:  4653
Name:  ? Seita.5G465300 Secondary Identifier:  ? PAC:32681512
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-7279 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G465300 0.5kb upstream 0.5kb upstream 4581 true scaffold_5: 46984849-46989429 Setaria italica
Seita.5G465300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 46984849-46985348 Setaria italica
Seita.5G465300 0.5kb downstream 0.5kb downstream 4581 true scaffold_5: 46985349-46989929 Setaria italica
Seita.5G465300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 46989430-46989929 Setaria italica
Seita.5G465300 1.0kb upstream 1.0kb upstream 5081 true scaffold_5: 46984349-46989429 Setaria italica
Seita.5G465300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 46984349-46985348 Setaria italica
Seita.5G465300 1.0kb downstream 1.0kb downstream 5081 true scaffold_5: 46985349-46990429 Setaria italica
Seita.5G465300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 46989430-46990429 Setaria italica
Seita.5G465300 2.0kb upstream 2.0kb upstream 6081 true scaffold_5: 46983349-46989429 Setaria italica
Seita.5G465300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 46983349-46985348 Setaria italica
Seita.5G465300 2.0kb downstream 2.0kb downstream 6081 true scaffold_5: 46985349-46991429 Setaria italica
Seita.5G465300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 46989430-46991429 Setaria italica
Seita.5G465300 5.0kb upstream 5.0kb upstream 9081 true scaffold_5: 46980349-46989429 Setaria italica
Seita.5G465300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 46980349-46985348 Setaria italica
Seita.5G465300 5.0kb downstream 5.0kb downstream 9081 true scaffold_5: 46985349-46994429 Setaria italica
Seita.5G465300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 46989430-46994429 Setaria italica
Seita.5G465300 10.0kb upstream 10.0kb upstream 14081 true scaffold_5: 46975349-46989429 Setaria italica
Seita.5G465300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 46975349-46985348 Setaria italica
Seita.5G465300 10.0kb downstream 10.0kb downstream 14081 true scaffold_5: 46985349-46999429 Setaria italica
Seita.5G465300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 46989430-46999429 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187396 5267 Panicoideae View MSA
124577730 5269 Grass View MSA
122050410 5273 Angiosperm View MSA
121350423 5274 Embryophyte View MSA
123425006 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.183        
cufflinks 2.907        
cufflinks 1.541        
cufflinks 0.806       Low
cufflinks 1.103       Low
cufflinks 3.223       High
cufflinks 1.902        
cufflinks 2.393        
cufflinks 2.412        
cufflinks 2.461        
cufflinks 2.443        
cufflinks 2.47        
cufflinks 1.742        
cufflinks 2.436        
cufflinks 3.02        
cufflinks 1.799        
cufflinks 3.161       High
cufflinks 1.794        
cufflinks 1.089       Low
cufflinks 3.018        

0 Strain