Gene : Seita.5G466700 S. italica v2.2
Defline:  (1 of 1) PTHR11088:SF26 - TRNA DIMETHYLALLYLTRANSFERASE 2 Genomic Order:  4667
Name:  ? Seita.5G466700 Secondary Identifier:  ? PAC:32681728
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-2781 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G466700 0.5kb upstream 0.5kb upstream 3107 true scaffold_5: 47039579-47042685 Setaria italica
Seita.5G466700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 47039579-47040078 Setaria italica
Seita.5G466700 0.5kb downstream 0.5kb downstream 3107 true scaffold_5: 47040079-47043185 Setaria italica
Seita.5G466700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 47042686-47043185 Setaria italica
Seita.5G466700 1.0kb upstream 1.0kb upstream 3607 true scaffold_5: 47039079-47042685 Setaria italica
Seita.5G466700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 47039079-47040078 Setaria italica
Seita.5G466700 1.0kb downstream 1.0kb downstream 3607 true scaffold_5: 47040079-47043685 Setaria italica
Seita.5G466700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 47042686-47043685 Setaria italica
Seita.5G466700 2.0kb upstream 2.0kb upstream 4607 true scaffold_5: 47038079-47042685 Setaria italica
Seita.5G466700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 47038079-47040078 Setaria italica
Seita.5G466700 2.0kb downstream 2.0kb downstream 4607 true scaffold_5: 47040079-47044685 Setaria italica
Seita.5G466700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 47042686-47044685 Setaria italica
Seita.5G466700 5.0kb upstream 5.0kb upstream 7607 true scaffold_5: 47035079-47042685 Setaria italica
Seita.5G466700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 47035079-47040078 Setaria italica
Seita.5G466700 5.0kb downstream 5.0kb downstream 7607 true scaffold_5: 47040079-47047685 Setaria italica
Seita.5G466700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 47042686-47047685 Setaria italica
Seita.5G466700 10.0kb upstream 10.0kb upstream 12607 true scaffold_5: 47030079-47042685 Setaria italica
Seita.5G466700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 47030079-47040078 Setaria italica
Seita.5G466700 10.0kb downstream 10.0kb downstream 12607 true scaffold_5: 47040079-47052685 Setaria italica
Seita.5G466700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 47042686-47052685 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185785 5267 Panicoideae View MSA
124578987 5269 Grass View MSA
122043118 5273 Angiosperm View MSA
121350682 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.625        
cufflinks 8.032       High
cufflinks 2.917        
cufflinks 2.077       Low
cufflinks 1.797       Low
cufflinks 8.185       High
cufflinks 4.887        
cufflinks 6.794        
cufflinks 3.189        
cufflinks 9.264       High
cufflinks 5.694        
cufflinks 3.664        
cufflinks 3.72        
cufflinks 4.015        
cufflinks 4.694        
cufflinks 5.441        
cufflinks 5.786        
cufflinks 4.594        
cufflinks 2.397       Low
cufflinks 4.493        

0 Strain