Gene : Seita.5G467500 S. italica v2.2
Defline:  (1 of 6) PF05605 - Drought induced 19 protein (Di19), zinc-binding (zf-Di19) Genomic Order:  4675
Name:  ? Seita.5G467500 Secondary Identifier:  ? PAC:32680620
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G467500 0.5kb upstream 0.5kb upstream 2352 true scaffold_5: 47064434-47066785 Setaria italica
Seita.5G467500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 47064434-47064933 Setaria italica
Seita.5G467500 0.5kb downstream 0.5kb downstream 2352 true scaffold_5: 47064934-47067285 Setaria italica
Seita.5G467500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 47066786-47067285 Setaria italica
Seita.5G467500 1.0kb upstream 1.0kb upstream 2852 true scaffold_5: 47063934-47066785 Setaria italica
Seita.5G467500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 47063934-47064933 Setaria italica
Seita.5G467500 1.0kb downstream 1.0kb downstream 2852 true scaffold_5: 47064934-47067785 Setaria italica
Seita.5G467500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 47066786-47067785 Setaria italica
Seita.5G467500 2.0kb upstream 2.0kb upstream 3852 true scaffold_5: 47062934-47066785 Setaria italica
Seita.5G467500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 47062934-47064933 Setaria italica
Seita.5G467500 2.0kb downstream 2.0kb downstream 3852 true scaffold_5: 47064934-47068785 Setaria italica
Seita.5G467500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 47066786-47068785 Setaria italica
Seita.5G467500 5.0kb upstream 5.0kb upstream 6852 true scaffold_5: 47059934-47066785 Setaria italica
Seita.5G467500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 47059934-47064933 Setaria italica
Seita.5G467500 5.0kb downstream 5.0kb downstream 6852 true scaffold_5: 47064934-47071785 Setaria italica
Seita.5G467500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 47066786-47071785 Setaria italica
Seita.5G467500 10.0kb upstream 10.0kb upstream 11852 true scaffold_5: 47054934-47066785 Setaria italica
Seita.5G467500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 47054934-47064933 Setaria italica
Seita.5G467500 10.0kb downstream 10.0kb downstream 11852 true scaffold_5: 47064934-47076785 Setaria italica
Seita.5G467500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 47066786-47076785 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187987 5267 Panicoideae View MSA
124584689 5269 Grass View MSA
122043196 5273 Angiosperm View MSA
121347850 5274 Embryophyte View MSA
123380651 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.484       Low
cufflinks 2.254        
cufflinks 1.716       Low
cufflinks 1.799       Low
cufflinks 2.103        
cufflinks 2.564        
cufflinks 4.654        
cufflinks 6.27        
cufflinks 3.112        
cufflinks 3.499        
cufflinks 3.387        
cufflinks 13.197       High
cufflinks 9.405       High
cufflinks 1.699       Low
cufflinks 5.72        
cufflinks 3.83        
cufflinks 20.838     High High
cufflinks 8.641       High
cufflinks 2.563        
cufflinks 5.574        

0 Strain