Gene : Seita.6G081000 S. italica v2.2
Defline:  (1 of 1) PTHR21461:SF10 - C3H4 TYPE ZINC FINGER PROTEIN-RELATED Genomic Order:  810
Name:  ? Seita.6G081000 Secondary Identifier:  ? PAC:32700618
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G081000 0.5kb upstream 0.5kb upstream 3316 true scaffold_6: 7280852-7284167 Setaria italica
Seita.6G081000 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 7280852-7281351 Setaria italica
Seita.6G081000 0.5kb downstream 0.5kb downstream 3316 true scaffold_6: 7281352-7284667 Setaria italica
Seita.6G081000 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 7284168-7284667 Setaria italica
Seita.6G081000 1.0kb upstream 1.0kb upstream 3816 true scaffold_6: 7280352-7284167 Setaria italica
Seita.6G081000 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 7280352-7281351 Setaria italica
Seita.6G081000 1.0kb downstream 1.0kb downstream 3816 true scaffold_6: 7281352-7285167 Setaria italica
Seita.6G081000 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 7284168-7285167 Setaria italica
Seita.6G081000 2.0kb upstream 2.0kb upstream 4816 true scaffold_6: 7279352-7284167 Setaria italica
Seita.6G081000 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 7279352-7281351 Setaria italica
Seita.6G081000 2.0kb downstream 2.0kb downstream 4816 true scaffold_6: 7281352-7286167 Setaria italica
Seita.6G081000 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 7284168-7286167 Setaria italica
Seita.6G081000 5.0kb upstream 5.0kb upstream 7816 true scaffold_6: 7276352-7284167 Setaria italica
Seita.6G081000 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 7276352-7281351 Setaria italica
Seita.6G081000 5.0kb downstream 5.0kb downstream 7816 true scaffold_6: 7281352-7289167 Setaria italica
Seita.6G081000 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 7284168-7289167 Setaria italica
Seita.6G081000 10.0kb upstream 10.0kb upstream 12816 true scaffold_6: 7271352-7284167 Setaria italica
Seita.6G081000 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 7271352-7281351 Setaria italica
Seita.6G081000 10.0kb downstream 10.0kb downstream 12816 true scaffold_6: 7281352-7294167 Setaria italica
Seita.6G081000 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 7284168-7294167 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178519 5267 Panicoideae View MSA
124576752 5269 Grass View MSA
122047525 5273 Angiosperm View MSA
123428981 5275 Viridiplantae View MSA
121349408 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.147        
cufflinks 9.818        
cufflinks 0.877       Low
cufflinks 2.014       Low
cufflinks 4.184        
cufflinks 8.574        
cufflinks 7.289        
cufflinks 3.18        
cufflinks 5.997        
cufflinks 5.864        
cufflinks 11.151        
cufflinks 11.529        
cufflinks 13.387        
cufflinks 3.198        
cufflinks 22.267     High High
cufflinks 5.315        
cufflinks 24.737     High High
cufflinks 5.946        
cufflinks 3.508        
cufflinks 13.188        

0 Strain