Gene : Seita.6G080600 S. italica v2.2
Defline:  (1 of 1) PTHR10257//PTHR10257:SF17 - SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B Genomic Order:  806
Name:  ? Seita.6G080600 Secondary Identifier:  ? PAC:32698654
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G080600 0.5kb upstream 0.5kb upstream 4667 true scaffold_6: 7256422-7261088 Setaria italica
Seita.6G080600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 7256422-7256921 Setaria italica
Seita.6G080600 0.5kb downstream 0.5kb downstream 4667 true scaffold_6: 7256922-7261588 Setaria italica
Seita.6G080600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 7261089-7261588 Setaria italica
Seita.6G080600 1.0kb upstream 1.0kb upstream 5167 true scaffold_6: 7255922-7261088 Setaria italica
Seita.6G080600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 7255922-7256921 Setaria italica
Seita.6G080600 1.0kb downstream 1.0kb downstream 5167 true scaffold_6: 7256922-7262088 Setaria italica
Seita.6G080600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 7261089-7262088 Setaria italica
Seita.6G080600 2.0kb upstream 2.0kb upstream 6167 true scaffold_6: 7254922-7261088 Setaria italica
Seita.6G080600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 7254922-7256921 Setaria italica
Seita.6G080600 2.0kb downstream 2.0kb downstream 6167 true scaffold_6: 7256922-7263088 Setaria italica
Seita.6G080600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 7261089-7263088 Setaria italica
Seita.6G080600 5.0kb upstream 5.0kb upstream 9167 true scaffold_6: 7251922-7261088 Setaria italica
Seita.6G080600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 7251922-7256921 Setaria italica
Seita.6G080600 5.0kb downstream 5.0kb downstream 9167 true scaffold_6: 7256922-7266088 Setaria italica
Seita.6G080600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 7261089-7266088 Setaria italica
Seita.6G080600 10.0kb upstream 10.0kb upstream 14167 true scaffold_6: 7246922-7261088 Setaria italica
Seita.6G080600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 7246922-7256921 Setaria italica
Seita.6G080600 10.0kb downstream 10.0kb downstream 14167 true scaffold_6: 7256922-7271088 Setaria italica
Seita.6G080600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 7261089-7271088 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178943 5267 Panicoideae View MSA
124574932 5269 Grass View MSA
122044522 5273 Angiosperm View MSA
121346157 5274 Embryophyte View MSA
123427992 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.997     High  
cufflinks 15.533     High  
cufflinks 21.101     High  
cufflinks 18.118     High  
cufflinks 17.805     High  
cufflinks 16.486     High  
cufflinks 23.259     High  
cufflinks 10.691       Low
cufflinks 12.081       Low
cufflinks 9.957       Low
cufflinks 15.68     High  
cufflinks 20.153     High  
cufflinks 20.622     High  
cufflinks 16.85     High  
cufflinks 23.653     High High
cufflinks 26.484     High High
cufflinks 18.317     High  
cufflinks 24.314     High High
cufflinks 22.387     High  
cufflinks 18.304     High  

0 Strain