Gene : Seita.6G086800 S. italica v2.2
Defline:  (1 of 80) PF01357 - Pollen allergen (Pollen_allerg_1) Genomic Order:  868
Name:  ? Seita.6G086800 Secondary Identifier:  ? PAC:32700712
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G086800 0.5kb upstream 0.5kb upstream 857 true scaffold_6: 7704265-7705121 Setaria italica
Seita.6G086800 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 7704265-7704764 Setaria italica
Seita.6G086800 0.5kb downstream 0.5kb downstream 857 true scaffold_6: 7704765-7705621 Setaria italica
Seita.6G086800 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 7705122-7705621 Setaria italica
Seita.6G086800 1.0kb upstream 1.0kb upstream 1357 true scaffold_6: 7703765-7705121 Setaria italica
Seita.6G086800 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 7703765-7704764 Setaria italica
Seita.6G086800 1.0kb downstream 1.0kb downstream 1357 true scaffold_6: 7704765-7706121 Setaria italica
Seita.6G086800 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 7705122-7706121 Setaria italica
Seita.6G086800 2.0kb upstream 2.0kb upstream 2357 true scaffold_6: 7702765-7705121 Setaria italica
Seita.6G086800 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 7702765-7704764 Setaria italica
Seita.6G086800 2.0kb downstream 2.0kb downstream 2357 true scaffold_6: 7704765-7707121 Setaria italica
Seita.6G086800 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 7705122-7707121 Setaria italica
Seita.6G086800 5.0kb upstream 5.0kb upstream 5357 true scaffold_6: 7699765-7705121 Setaria italica
Seita.6G086800 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 7699765-7704764 Setaria italica
Seita.6G086800 5.0kb downstream 5.0kb downstream 5357 true scaffold_6: 7704765-7710121 Setaria italica
Seita.6G086800 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 7705122-7710121 Setaria italica
Seita.6G086800 10.0kb upstream 10.0kb upstream 10357 true scaffold_6: 7694765-7705121 Setaria italica
Seita.6G086800 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 7694765-7704764 Setaria italica
Seita.6G086800 10.0kb downstream 10.0kb downstream 10357 true scaffold_6: 7704765-7715121 Setaria italica
Seita.6G086800 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 7705122-7715121 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121996156 5273 Angiosperm View MSA
122199224 5267 Panicoideae View MSA
124590797 5269 Grass View MSA
121266324 5274 Embryophyte View MSA
123304666 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.051     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain