Gene : Seita.6G091100 S. italica v2.2
Defline:  (1 of 4) 2.7.8.7 - Holo-[acyl-carrier-protein] synthase / PPTase Genomic Order:  911
Name:  ? Seita.6G091100 Secondary Identifier:  ? PAC:32700768
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6012-1 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G091100 0.5kb upstream 0.5kb upstream 4974 true scaffold_6: 8322490-8327463 Setaria italica
Seita.6G091100 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 8322490-8322989 Setaria italica
Seita.6G091100 0.5kb downstream 0.5kb downstream 4974 true scaffold_6: 8322990-8327963 Setaria italica
Seita.6G091100 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 8327464-8327963 Setaria italica
Seita.6G091100 1.0kb upstream 1.0kb upstream 5474 true scaffold_6: 8321990-8327463 Setaria italica
Seita.6G091100 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 8321990-8322989 Setaria italica
Seita.6G091100 1.0kb downstream 1.0kb downstream 5474 true scaffold_6: 8322990-8328463 Setaria italica
Seita.6G091100 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 8327464-8328463 Setaria italica
Seita.6G091100 2.0kb upstream 2.0kb upstream 6474 true scaffold_6: 8320990-8327463 Setaria italica
Seita.6G091100 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 8320990-8322989 Setaria italica
Seita.6G091100 2.0kb downstream 2.0kb downstream 6474 true scaffold_6: 8322990-8329463 Setaria italica
Seita.6G091100 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 8327464-8329463 Setaria italica
Seita.6G091100 5.0kb upstream 5.0kb upstream 9474 true scaffold_6: 8317990-8327463 Setaria italica
Seita.6G091100 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 8317990-8322989 Setaria italica
Seita.6G091100 5.0kb downstream 5.0kb downstream 9474 true scaffold_6: 8322990-8332463 Setaria italica
Seita.6G091100 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 8327464-8332463 Setaria italica
Seita.6G091100 10.0kb upstream 10.0kb upstream 14474 true scaffold_6: 8312990-8327463 Setaria italica
Seita.6G091100 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 8312990-8322989 Setaria italica
Seita.6G091100 10.0kb downstream 10.0kb downstream 14474 true scaffold_6: 8322990-8337463 Setaria italica
Seita.6G091100 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 8327464-8337463 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183454 5267 Panicoideae View MSA
124570135 5269 Grass View MSA
122041832 5273 Angiosperm View MSA
123429078 5275 Viridiplantae View MSA
121344089 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.212       Low
cufflinks 2.943       High
cufflinks 0.378        
cufflinks 0.666        
cufflinks 0.412        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.058     Low Low
cufflinks 1.347        
cufflinks 0.544        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.223        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.19       High
cufflinks 0.944        
cufflinks 0.524        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.251        
cufflinks 1.277        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain