Gene : Seita.6G091200 S. italica v2.2
Defline:  (1 of 4) 2.7.8.7 - Holo-[acyl-carrier-protein] synthase / PPTase Genomic Order:  912
Name:  ? Seita.6G091200 Secondary Identifier:  ? PAC:32701316
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6012-1 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G091200 0.5kb upstream 0.5kb upstream 4890 true scaffold_6: 8340056-8344945 Setaria italica
Seita.6G091200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 8340056-8340555 Setaria italica
Seita.6G091200 0.5kb downstream 0.5kb downstream 4890 true scaffold_6: 8340556-8345445 Setaria italica
Seita.6G091200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 8344946-8345445 Setaria italica
Seita.6G091200 1.0kb upstream 1.0kb upstream 5390 true scaffold_6: 8339556-8344945 Setaria italica
Seita.6G091200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 8339556-8340555 Setaria italica
Seita.6G091200 1.0kb downstream 1.0kb downstream 5390 true scaffold_6: 8340556-8345945 Setaria italica
Seita.6G091200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 8344946-8345945 Setaria italica
Seita.6G091200 2.0kb upstream 2.0kb upstream 6390 true scaffold_6: 8338556-8344945 Setaria italica
Seita.6G091200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 8338556-8340555 Setaria italica
Seita.6G091200 2.0kb downstream 2.0kb downstream 6390 true scaffold_6: 8340556-8346945 Setaria italica
Seita.6G091200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 8344946-8346945 Setaria italica
Seita.6G091200 5.0kb upstream 5.0kb upstream 9390 true scaffold_6: 8335556-8344945 Setaria italica
Seita.6G091200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 8335556-8340555 Setaria italica
Seita.6G091200 5.0kb downstream 5.0kb downstream 9390 true scaffold_6: 8340556-8349945 Setaria italica
Seita.6G091200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 8344946-8349945 Setaria italica
Seita.6G091200 10.0kb upstream 10.0kb upstream 14390 true scaffold_6: 8330556-8344945 Setaria italica
Seita.6G091200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 8330556-8340555 Setaria italica
Seita.6G091200 10.0kb downstream 10.0kb downstream 14390 true scaffold_6: 8340556-8354945 Setaria italica
Seita.6G091200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 8344946-8354945 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183454 5267 Panicoideae View MSA
124570135 5269 Grass View MSA
122041832 5273 Angiosperm View MSA
123429078 5275 Viridiplantae View MSA
121344089 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.821        
cufflinks 3.795        
cufflinks 3.421        
cufflinks 3.683        
cufflinks 2.62       Low
cufflinks 2.864        
cufflinks 3.388        
cufflinks 5.215       High
cufflinks 2.523       Low
cufflinks 3.382        
cufflinks 2.726        
cufflinks 4.316       High
cufflinks 2.913        
cufflinks 2.946        
cufflinks 3.402        
cufflinks 3.069        
cufflinks 4.295       High
cufflinks 2.544       Low
cufflinks 4.485       High
cufflinks 3.747        

0 Strain