Gene : Seita.6G093200 S. italica v2.2
Defline:  (1 of 1) PTHR19957//PTHR19957:SF94 - SYNTAXIN Genomic Order:  932
Name:  ? Seita.6G093200 Secondary Identifier:  ? PAC:32699646
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G093200 0.5kb upstream 0.5kb upstream 6473 true scaffold_6: 9093906-9100378 Setaria italica
Seita.6G093200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 9099879-9100378 Setaria italica
Seita.6G093200 0.5kb downstream 0.5kb downstream 6473 true scaffold_6: 9093406-9099878 Setaria italica
Seita.6G093200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 9093406-9093905 Setaria italica
Seita.6G093200 1.0kb upstream 1.0kb upstream 6973 true scaffold_6: 9093906-9100878 Setaria italica
Seita.6G093200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 9099879-9100878 Setaria italica
Seita.6G093200 1.0kb downstream 1.0kb downstream 6973 true scaffold_6: 9092906-9099878 Setaria italica
Seita.6G093200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 9092906-9093905 Setaria italica
Seita.6G093200 2.0kb upstream 2.0kb upstream 7973 true scaffold_6: 9093906-9101878 Setaria italica
Seita.6G093200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 9099879-9101878 Setaria italica
Seita.6G093200 2.0kb downstream 2.0kb downstream 7973 true scaffold_6: 9091906-9099878 Setaria italica
Seita.6G093200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 9091906-9093905 Setaria italica
Seita.6G093200 5.0kb upstream 5.0kb upstream 10973 true scaffold_6: 9093906-9104878 Setaria italica
Seita.6G093200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 9099879-9104878 Setaria italica
Seita.6G093200 5.0kb downstream 5.0kb downstream 10973 true scaffold_6: 9088906-9099878 Setaria italica
Seita.6G093200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 9088906-9093905 Setaria italica
Seita.6G093200 10.0kb upstream 10.0kb upstream 15973 true scaffold_6: 9093906-9109878 Setaria italica
Seita.6G093200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 9099879-9109878 Setaria italica
Seita.6G093200 10.0kb downstream 10.0kb downstream 15973 true scaffold_6: 9083906-9099878 Setaria italica
Seita.6G093200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 9083906-9093905 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178238 5267 Panicoideae View MSA
124576770 5269 Grass View MSA
122042907 5273 Angiosperm View MSA
121348883 5274 Embryophyte View MSA
123381058 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.132       Low
cufflinks 6.999        
cufflinks 5.39        
cufflinks 5.244        
cufflinks 4.378        
cufflinks 7.249        
cufflinks 6.666        
cufflinks 6.746        
cufflinks 4.849        
cufflinks 2.708       Low
cufflinks 4.68        
cufflinks 6.551        
cufflinks 10.501       High
cufflinks 4.703        
cufflinks 8.264       High
cufflinks 6.886        
cufflinks 8.144       High
cufflinks 4.01       Low
cufflinks 6.739        
cufflinks 7.243        

0 Strain