Gene : Seita.6G097000 S. italica v2.2
Defline:  (1 of 1) 2.1.3.2 - Aspartate carbamoyltransferase / Carbamylaspartotranskinase Genomic Order:  970
Name:  ? Seita.6G097000 Secondary Identifier:  ? PAC:32700429
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-162 Setaria italica pathologic  
Sitalica PWY-5686 Setaria italica pathologic  
Sitalica PWY-7211 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G097000 0.5kb upstream 0.5kb upstream 2878 true scaffold_6: 10248836-10251713 Setaria italica
Seita.6G097000 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 10248836-10249335 Setaria italica
Seita.6G097000 0.5kb downstream 0.5kb downstream 2878 true scaffold_6: 10249336-10252213 Setaria italica
Seita.6G097000 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 10251714-10252213 Setaria italica
Seita.6G097000 1.0kb upstream 1.0kb upstream 3378 true scaffold_6: 10248336-10251713 Setaria italica
Seita.6G097000 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 10248336-10249335 Setaria italica
Seita.6G097000 1.0kb downstream 1.0kb downstream 3378 true scaffold_6: 10249336-10252713 Setaria italica
Seita.6G097000 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 10251714-10252713 Setaria italica
Seita.6G097000 2.0kb upstream 2.0kb upstream 4378 true scaffold_6: 10247336-10251713 Setaria italica
Seita.6G097000 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 10247336-10249335 Setaria italica
Seita.6G097000 2.0kb downstream 2.0kb downstream 4378 true scaffold_6: 10249336-10253713 Setaria italica
Seita.6G097000 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 10251714-10253713 Setaria italica
Seita.6G097000 5.0kb upstream 5.0kb upstream 7378 true scaffold_6: 10244336-10251713 Setaria italica
Seita.6G097000 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 10244336-10249335 Setaria italica
Seita.6G097000 5.0kb downstream 5.0kb downstream 7378 true scaffold_6: 10249336-10256713 Setaria italica
Seita.6G097000 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 10251714-10256713 Setaria italica
Seita.6G097000 10.0kb upstream 10.0kb upstream 12378 true scaffold_6: 10239336-10251713 Setaria italica
Seita.6G097000 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 10239336-10249335 Setaria italica
Seita.6G097000 10.0kb downstream 10.0kb downstream 12378 true scaffold_6: 10249336-10261713 Setaria italica
Seita.6G097000 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 10251714-10261713 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191667 5267 Panicoideae View MSA
124577983 5269 Grass View MSA
122047002 5273 Angiosperm View MSA
121345349 5274 Embryophyte View MSA
123427161 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.926        
cufflinks 6.87       High
cufflinks 3.348        
cufflinks 1.838       Low
cufflinks 2.612        
cufflinks 7.835       High
cufflinks 5.063        
cufflinks 6.079        
cufflinks 9.448       High
cufflinks 4.873        
cufflinks 4.587        
cufflinks 4.263        
cufflinks 2.76        
cufflinks 6.658        
cufflinks 3.778        
cufflinks 2.715        
cufflinks 5.112        
cufflinks 1.529       Low
cufflinks 1.474       Low
cufflinks 5.261        

0 Strain