Gene : Seita.6G098500 S. italica v2.2
Defline:  (1 of 25) PF06749 - Protein of unknown function (DUF1218) (DUF1218) Genomic Order:  985
Name:  ? Seita.6G098500 Secondary Identifier:  ? PAC:32699866
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G098500 0.5kb upstream 0.5kb upstream 10519 true scaffold_6: 10837902-10848420 Setaria italica
Seita.6G098500 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 10847921-10848420 Setaria italica
Seita.6G098500 0.5kb downstream 0.5kb downstream 10519 true scaffold_6: 10837402-10847920 Setaria italica
Seita.6G098500 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 10837402-10837901 Setaria italica
Seita.6G098500 1.0kb upstream 1.0kb upstream 11019 true scaffold_6: 10837902-10848920 Setaria italica
Seita.6G098500 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 10847921-10848920 Setaria italica
Seita.6G098500 1.0kb downstream 1.0kb downstream 11019 true scaffold_6: 10836902-10847920 Setaria italica
Seita.6G098500 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 10836902-10837901 Setaria italica
Seita.6G098500 2.0kb upstream 2.0kb upstream 12019 true scaffold_6: 10837902-10849920 Setaria italica
Seita.6G098500 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 10847921-10849920 Setaria italica
Seita.6G098500 2.0kb downstream 2.0kb downstream 12019 true scaffold_6: 10835902-10847920 Setaria italica
Seita.6G098500 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 10835902-10837901 Setaria italica
Seita.6G098500 5.0kb upstream 5.0kb upstream 15019 true scaffold_6: 10837902-10852920 Setaria italica
Seita.6G098500 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 10847921-10852920 Setaria italica
Seita.6G098500 5.0kb downstream 5.0kb downstream 15019 true scaffold_6: 10832902-10847920 Setaria italica
Seita.6G098500 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 10832902-10837901 Setaria italica
Seita.6G098500 10.0kb upstream 10.0kb upstream 20019 true scaffold_6: 10837902-10857920 Setaria italica
Seita.6G098500 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 10847921-10857920 Setaria italica
Seita.6G098500 10.0kb downstream 10.0kb downstream 20019 true scaffold_6: 10827902-10847920 Setaria italica
Seita.6G098500 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 10827902-10837901 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186846 5267 Panicoideae View MSA
124570453 5269 Grass View MSA
122049951 5273 Angiosperm View MSA
121351740 5274 Embryophyte View MSA
123382300 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.441        
cufflinks 2.667       High
cufflinks 0.905       Low
cufflinks 0.965       Low
cufflinks 1.227        
cufflinks 2.579       High
cufflinks 1.614        
cufflinks 2.29       High
cufflinks 1.481        
cufflinks 3.973       High
cufflinks 1.687        
cufflinks 0.928       Low
cufflinks 1.31        
cufflinks 1.506        
cufflinks 1.274        
cufflinks 1.226        
cufflinks 1.494        
cufflinks 1.071        
cufflinks 0.931       Low
cufflinks 1.423        

0 Strain