Gene : Seita.6G099000 S. italica v2.2
Defline:  (1 of 2) PTHR12169:SF6 - LACTATION ELEVATED PROTEIN 1 Genomic Order:  990
Name:  ? Seita.6G099000 Secondary Identifier:  ? PAC:32699193
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ANAEROFRUCAT-PWY Setaria italica pathologic  
Sitalica ANAGLYCOLYSIS-PWY Setaria italica pathologic  
Sitalica GLUCOSE1PMETAB-PWY Setaria italica pathologic  
Sitalica PWY-621 Setaria italica pathologic  
Sitalica PWY-7238 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G099000 0.5kb upstream 0.5kb upstream 7349 true scaffold_6: 11030028-11037376 Setaria italica
Seita.6G099000 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 11030028-11030527 Setaria italica
Seita.6G099000 0.5kb downstream 0.5kb downstream 7349 true scaffold_6: 11030528-11037876 Setaria italica
Seita.6G099000 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 11037377-11037876 Setaria italica
Seita.6G099000 1.0kb upstream 1.0kb upstream 7849 true scaffold_6: 11029528-11037376 Setaria italica
Seita.6G099000 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 11029528-11030527 Setaria italica
Seita.6G099000 1.0kb downstream 1.0kb downstream 7849 true scaffold_6: 11030528-11038376 Setaria italica
Seita.6G099000 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 11037377-11038376 Setaria italica
Seita.6G099000 2.0kb upstream 2.0kb upstream 8849 true scaffold_6: 11028528-11037376 Setaria italica
Seita.6G099000 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 11028528-11030527 Setaria italica
Seita.6G099000 2.0kb downstream 2.0kb downstream 8849 true scaffold_6: 11030528-11039376 Setaria italica
Seita.6G099000 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 11037377-11039376 Setaria italica
Seita.6G099000 5.0kb upstream 5.0kb upstream 11849 true scaffold_6: 11025528-11037376 Setaria italica
Seita.6G099000 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 11025528-11030527 Setaria italica
Seita.6G099000 5.0kb downstream 5.0kb downstream 11849 true scaffold_6: 11030528-11042376 Setaria italica
Seita.6G099000 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 11037377-11042376 Setaria italica
Seita.6G099000 10.0kb upstream 10.0kb upstream 16849 true scaffold_6: 11020528-11037376 Setaria italica
Seita.6G099000 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 11020528-11030527 Setaria italica
Seita.6G099000 10.0kb downstream 10.0kb downstream 16849 true scaffold_6: 11030528-11047376 Setaria italica
Seita.6G099000 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 11037377-11047376 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194272 5267 Panicoideae View MSA
124577814 5269 Grass View MSA
122047660 5273 Angiosperm View MSA
121344773 5274 Embryophyte View MSA
123427307 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.204        
cufflinks 9.369        
cufflinks 24.564     High High
cufflinks 19.495     High High
cufflinks 11.035     High  
cufflinks 9.68        
cufflinks 12.286        
cufflinks 12.237        
cufflinks 6.975       Low
cufflinks 7.904        
cufflinks 9.3        
cufflinks 6.976       Low
cufflinks 8.194        
cufflinks 21.485     High High
cufflinks 12.134        
cufflinks 21.715     High High
cufflinks 10.321        
cufflinks 28.163     High High
cufflinks 19.615     High High
cufflinks 7.725       Low

0 Strain