Gene : Seita.6G104000 S. italica v2.2
Defline:  (1 of 2) PTHR13675:SF1 - EXPRESSED PROTEIN Genomic Order:  1040
Name:  ? Seita.6G104000 Secondary Identifier:  ? PAC:32701099
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G104000 0.5kb upstream 0.5kb upstream 7231 true scaffold_6: 13214239-13221469 Setaria italica
Seita.6G104000 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 13214239-13214738 Setaria italica
Seita.6G104000 0.5kb downstream 0.5kb downstream 7231 true scaffold_6: 13214739-13221969 Setaria italica
Seita.6G104000 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 13221470-13221969 Setaria italica
Seita.6G104000 1.0kb upstream 1.0kb upstream 7731 true scaffold_6: 13213739-13221469 Setaria italica
Seita.6G104000 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 13213739-13214738 Setaria italica
Seita.6G104000 1.0kb downstream 1.0kb downstream 7731 true scaffold_6: 13214739-13222469 Setaria italica
Seita.6G104000 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 13221470-13222469 Setaria italica
Seita.6G104000 2.0kb upstream 2.0kb upstream 8731 true scaffold_6: 13212739-13221469 Setaria italica
Seita.6G104000 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 13212739-13214738 Setaria italica
Seita.6G104000 2.0kb downstream 2.0kb downstream 8731 true scaffold_6: 13214739-13223469 Setaria italica
Seita.6G104000 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 13221470-13223469 Setaria italica
Seita.6G104000 5.0kb upstream 5.0kb upstream 11731 true scaffold_6: 13209739-13221469 Setaria italica
Seita.6G104000 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 13209739-13214738 Setaria italica
Seita.6G104000 5.0kb downstream 5.0kb downstream 11731 true scaffold_6: 13214739-13226469 Setaria italica
Seita.6G104000 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 13221470-13226469 Setaria italica
Seita.6G104000 10.0kb upstream 10.0kb upstream 16731 true scaffold_6: 13204739-13221469 Setaria italica
Seita.6G104000 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 13204739-13214738 Setaria italica
Seita.6G104000 10.0kb downstream 10.0kb downstream 16731 true scaffold_6: 13214739-13231469 Setaria italica
Seita.6G104000 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 13221470-13231469 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193093 5267 Panicoideae View MSA
124590098 5269 Grass View MSA
122045056 5273 Angiosperm View MSA
121351084 5274 Embryophyte View MSA
123425666 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.461        
cufflinks 1.268        
cufflinks 0.587       Low
cufflinks 0.557       Low
cufflinks 0.628       Low
cufflinks 1.338        
cufflinks 0.597       Low
cufflinks 1.016        
cufflinks 0.69        
cufflinks 1.828        
cufflinks 1.03        
cufflinks 2.554       High
cufflinks 1.828        
cufflinks 1.551        
cufflinks 2.452       High
cufflinks 0.668       Low
cufflinks 2.42       High
cufflinks 1.093        
cufflinks 0.638       Low
cufflinks 2.011       High

0 Strain