Gene : Seita.6G102200 S. italica v2.2
Defline:  (1 of 2) KOG1106 - Uncharacterized conserved protein Genomic Order:  1022
Name:  ? Seita.6G102200 Secondary Identifier:  ? PAC:32699083
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G102200 0.5kb upstream 0.5kb upstream 10665 true scaffold_6: 12626074-12636738 Setaria italica
Seita.6G102200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 12626074-12626573 Setaria italica
Seita.6G102200 0.5kb downstream 0.5kb downstream 10665 true scaffold_6: 12626574-12637238 Setaria italica
Seita.6G102200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 12636739-12637238 Setaria italica
Seita.6G102200 1.0kb upstream 1.0kb upstream 11165 true scaffold_6: 12625574-12636738 Setaria italica
Seita.6G102200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 12625574-12626573 Setaria italica
Seita.6G102200 1.0kb downstream 1.0kb downstream 11165 true scaffold_6: 12626574-12637738 Setaria italica
Seita.6G102200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 12636739-12637738 Setaria italica
Seita.6G102200 2.0kb upstream 2.0kb upstream 12165 true scaffold_6: 12624574-12636738 Setaria italica
Seita.6G102200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 12624574-12626573 Setaria italica
Seita.6G102200 2.0kb downstream 2.0kb downstream 12165 true scaffold_6: 12626574-12638738 Setaria italica
Seita.6G102200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 12636739-12638738 Setaria italica
Seita.6G102200 5.0kb upstream 5.0kb upstream 15165 true scaffold_6: 12621574-12636738 Setaria italica
Seita.6G102200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 12621574-12626573 Setaria italica
Seita.6G102200 5.0kb downstream 5.0kb downstream 15165 true scaffold_6: 12626574-12641738 Setaria italica
Seita.6G102200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 12636739-12641738 Setaria italica
Seita.6G102200 10.0kb upstream 10.0kb upstream 20165 true scaffold_6: 12616574-12636738 Setaria italica
Seita.6G102200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 12616574-12626573 Setaria italica
Seita.6G102200 10.0kb downstream 10.0kb downstream 20165 true scaffold_6: 12626574-12646738 Setaria italica
Seita.6G102200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 12636739-12646738 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122200264 5267 Panicoideae View MSA
124586855 5269 Grass View MSA
122043204 5273 Angiosperm View MSA
121351583 5274 Embryophyte View MSA
123423787 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.884       High
cufflinks 0.155        
cufflinks 0.242        
cufflinks 0.127       Low
cufflinks 0.199        
cufflinks 0.269        
cufflinks 0.247        
cufflinks 0.315        
cufflinks 0.241        
cufflinks 0.549       High
cufflinks 0.468        
cufflinks 0.129     Low Low
cufflinks 0.094     Low Low
cufflinks 0.253        
cufflinks 0.165        
cufflinks 0.706       High
cufflinks 0.192        
cufflinks 0.755       High
cufflinks 0.175        
cufflinks 0.139        

0 Strain