Gene : Seita.6G108900 S. italica v2.2
Defline:  (1 of 1) PTHR15430 - FKBP-ASSOCIATED PROTEIN Genomic Order:  1089
Name:  ? Seita.6G108900 Secondary Identifier:  ? PAC:32700178
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G108900 0.5kb upstream 0.5kb upstream 7114 true scaffold_6: 15710638-15717751 Setaria italica
Seita.6G108900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 15710638-15711137 Setaria italica
Seita.6G108900 0.5kb downstream 0.5kb downstream 7114 true scaffold_6: 15711138-15718251 Setaria italica
Seita.6G108900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 15717752-15718251 Setaria italica
Seita.6G108900 1.0kb upstream 1.0kb upstream 7614 true scaffold_6: 15710138-15717751 Setaria italica
Seita.6G108900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 15710138-15711137 Setaria italica
Seita.6G108900 1.0kb downstream 1.0kb downstream 7614 true scaffold_6: 15711138-15718751 Setaria italica
Seita.6G108900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 15717752-15718751 Setaria italica
Seita.6G108900 2.0kb upstream 2.0kb upstream 8614 true scaffold_6: 15709138-15717751 Setaria italica
Seita.6G108900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 15709138-15711137 Setaria italica
Seita.6G108900 2.0kb downstream 2.0kb downstream 8614 true scaffold_6: 15711138-15719751 Setaria italica
Seita.6G108900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 15717752-15719751 Setaria italica
Seita.6G108900 5.0kb upstream 5.0kb upstream 11614 true scaffold_6: 15706138-15717751 Setaria italica
Seita.6G108900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 15706138-15711137 Setaria italica
Seita.6G108900 5.0kb downstream 5.0kb downstream 11614 true scaffold_6: 15711138-15722751 Setaria italica
Seita.6G108900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 15717752-15722751 Setaria italica
Seita.6G108900 10.0kb upstream 10.0kb upstream 16614 true scaffold_6: 15701138-15717751 Setaria italica
Seita.6G108900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 15701138-15711137 Setaria italica
Seita.6G108900 10.0kb downstream 10.0kb downstream 16614 true scaffold_6: 15711138-15727751 Setaria italica
Seita.6G108900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 15717752-15727751 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181719 5267 Panicoideae View MSA
124580485 5269 Grass View MSA
122043939 5273 Angiosperm View MSA
121347412 5274 Embryophyte View MSA
123380542 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.951        
cufflinks 3.923       High
cufflinks 0.929        
cufflinks 0.408       Low
cufflinks 0.552       Low
cufflinks 3.057       High
cufflinks 1.75        
cufflinks 1.989        
cufflinks 2.046        
cufflinks 1.544        
cufflinks 1.876        
cufflinks 1.105        
cufflinks 1.213        
cufflinks 1.305        
cufflinks 2.013        
cufflinks 1.361        
cufflinks 1.872        
cufflinks 0.76        
cufflinks 0.319       Low
cufflinks 2.139        

0 Strain