Gene : Seita.6G117900 S. italica v2.2
Defline:  (1 of 2) 1.1.1.3//2.7.2.4 - Aspartate kinase / Aspartokinase Genomic Order:  1179
Name:  ? Seita.6G117900 Secondary Identifier:  ? PAC:32699492
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica HOMOSERSYN-PWY Setaria italica pathologic  
Sitalica PWY-3001 Setaria italica pathologic  
Sitalica PWY-5097 Setaria italica pathologic  
Sitalica PWY-724 Setaria italica pathologic  
Sitalica THRESYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G117900 0.5kb upstream 0.5kb upstream 11895 true scaffold_6: 19584649-19596543 Setaria italica
Seita.6G117900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 19596044-19596543 Setaria italica
Seita.6G117900 0.5kb downstream 0.5kb downstream 11895 true scaffold_6: 19584149-19596043 Setaria italica
Seita.6G117900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 19584149-19584648 Setaria italica
Seita.6G117900 1.0kb upstream 1.0kb upstream 12395 true scaffold_6: 19584649-19597043 Setaria italica
Seita.6G117900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 19596044-19597043 Setaria italica
Seita.6G117900 1.0kb downstream 1.0kb downstream 12395 true scaffold_6: 19583649-19596043 Setaria italica
Seita.6G117900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 19583649-19584648 Setaria italica
Seita.6G117900 2.0kb upstream 2.0kb upstream 13395 true scaffold_6: 19584649-19598043 Setaria italica
Seita.6G117900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 19596044-19598043 Setaria italica
Seita.6G117900 2.0kb downstream 2.0kb downstream 13395 true scaffold_6: 19582649-19596043 Setaria italica
Seita.6G117900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 19582649-19584648 Setaria italica
Seita.6G117900 5.0kb upstream 5.0kb upstream 16395 true scaffold_6: 19584649-19601043 Setaria italica
Seita.6G117900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 19596044-19601043 Setaria italica
Seita.6G117900 5.0kb downstream 5.0kb downstream 16395 true scaffold_6: 19579649-19596043 Setaria italica
Seita.6G117900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 19579649-19584648 Setaria italica
Seita.6G117900 10.0kb upstream 10.0kb upstream 21395 true scaffold_6: 19584649-19606043 Setaria italica
Seita.6G117900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 19596044-19606043 Setaria italica
Seita.6G117900 10.0kb downstream 10.0kb downstream 21395 true scaffold_6: 19574649-19596043 Setaria italica
Seita.6G117900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 19574649-19584648 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122064839 5267 Panicoideae View MSA
124590104 5269 Grass View MSA
122043013 5273 Angiosperm View MSA
121350238 5274 Embryophyte View MSA
123423775 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.065     High High
cufflinks 7.838        
cufflinks 4.729        
cufflinks 4.599        
cufflinks 5.987        
cufflinks 8.109        
cufflinks 7.978        
cufflinks 5.551        
cufflinks 11.154       High
cufflinks 4.507        
cufflinks 9.95        
cufflinks 5.764        
cufflinks 4.291        
cufflinks 5.74        
cufflinks 5.511        
cufflinks 9.598        
cufflinks 7.049        
cufflinks 19.422     High High
cufflinks 1.582       Low
cufflinks 6.029        

0 Strain