Gene : Seita.6G039800 S. italica v2.2
Defline:  (1 of 1) PTHR15921:SF4 - PCF11P-SIMILAR PROTEIN 4 Genomic Order:  398
Name:  ? Seita.6G039800 Secondary Identifier:  ? PAC:32701502
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G039800 0.5kb upstream 0.5kb upstream 9478 true scaffold_6: 3008096-3017573 Setaria italica
Seita.6G039800 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 3008096-3008595 Setaria italica
Seita.6G039800 0.5kb downstream 0.5kb downstream 9478 true scaffold_6: 3008596-3018073 Setaria italica
Seita.6G039800 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 3017574-3018073 Setaria italica
Seita.6G039800 1.0kb upstream 1.0kb upstream 9978 true scaffold_6: 3007596-3017573 Setaria italica
Seita.6G039800 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 3007596-3008595 Setaria italica
Seita.6G039800 1.0kb downstream 1.0kb downstream 9978 true scaffold_6: 3008596-3018573 Setaria italica
Seita.6G039800 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 3017574-3018573 Setaria italica
Seita.6G039800 2.0kb upstream 2.0kb upstream 10978 true scaffold_6: 3006596-3017573 Setaria italica
Seita.6G039800 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 3006596-3008595 Setaria italica
Seita.6G039800 2.0kb downstream 2.0kb downstream 10978 true scaffold_6: 3008596-3019573 Setaria italica
Seita.6G039800 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 3017574-3019573 Setaria italica
Seita.6G039800 5.0kb upstream 5.0kb upstream 13978 true scaffold_6: 3003596-3017573 Setaria italica
Seita.6G039800 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 3003596-3008595 Setaria italica
Seita.6G039800 5.0kb downstream 5.0kb downstream 13978 true scaffold_6: 3008596-3022573 Setaria italica
Seita.6G039800 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 3017574-3022573 Setaria italica
Seita.6G039800 10.0kb upstream 10.0kb upstream 18978 true scaffold_6: 2998596-3017573 Setaria italica
Seita.6G039800 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 2998596-3008595 Setaria italica
Seita.6G039800 10.0kb downstream 10.0kb downstream 18978 true scaffold_6: 3008596-3027573 Setaria italica
Seita.6G039800 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 3017574-3027573 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178391 5267 Panicoideae View MSA
124578937 5269 Grass View MSA
122048698 5273 Angiosperm View MSA
121349751 5274 Embryophyte View MSA
123426332 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.198        
cufflinks 4.147        
cufflinks 3.016        
cufflinks 2.385       Low
cufflinks 2.639       Low
cufflinks 4.313        
cufflinks 3.611        
cufflinks 2.584       Low
cufflinks 3.075        
cufflinks 2.86        
cufflinks 3.155        
cufflinks 3.894        
cufflinks 2.921        
cufflinks 2.692        
cufflinks 3.794        
cufflinks 5.211       High
cufflinks 3.401        
cufflinks 6.047       High
cufflinks 2.658        
cufflinks 3.416        

0 Strain