Gene : Seita.6G045300 S. italica v2.2
Defline:  (1 of 1) PTHR12161:SF21 - REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  453
Name:  ? Seita.6G045300 Secondary Identifier:  ? PAC:32701219
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G045300 0.5kb upstream 0.5kb upstream 4160 true scaffold_6: 3497201-3501360 Setaria italica
Seita.6G045300 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 3497201-3497700 Setaria italica
Seita.6G045300 0.5kb downstream 0.5kb downstream 4160 true scaffold_6: 3497701-3501860 Setaria italica
Seita.6G045300 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 3501361-3501860 Setaria italica
Seita.6G045300 1.0kb upstream 1.0kb upstream 4660 true scaffold_6: 3496701-3501360 Setaria italica
Seita.6G045300 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 3496701-3497700 Setaria italica
Seita.6G045300 1.0kb downstream 1.0kb downstream 4660 true scaffold_6: 3497701-3502360 Setaria italica
Seita.6G045300 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 3501361-3502360 Setaria italica
Seita.6G045300 2.0kb upstream 2.0kb upstream 5660 true scaffold_6: 3495701-3501360 Setaria italica
Seita.6G045300 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 3495701-3497700 Setaria italica
Seita.6G045300 2.0kb downstream 2.0kb downstream 5660 true scaffold_6: 3497701-3503360 Setaria italica
Seita.6G045300 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 3501361-3503360 Setaria italica
Seita.6G045300 5.0kb upstream 5.0kb upstream 8660 true scaffold_6: 3492701-3501360 Setaria italica
Seita.6G045300 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 3492701-3497700 Setaria italica
Seita.6G045300 5.0kb downstream 5.0kb downstream 8660 true scaffold_6: 3497701-3506360 Setaria italica
Seita.6G045300 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 3501361-3506360 Setaria italica
Seita.6G045300 10.0kb upstream 10.0kb upstream 13660 true scaffold_6: 3487701-3501360 Setaria italica
Seita.6G045300 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 3487701-3497700 Setaria italica
Seita.6G045300 10.0kb downstream 10.0kb downstream 13660 true scaffold_6: 3497701-3511360 Setaria italica
Seita.6G045300 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 3501361-3511360 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194876 5267 Panicoideae View MSA
124574272 5269 Grass View MSA
122045314 5273 Angiosperm View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.11     High  
cufflinks 18.82     High  
cufflinks 16.961     High Low
cufflinks 21.349     High  
cufflinks 25.444     High  
cufflinks 17.622     High  
cufflinks 17.48     High  
cufflinks 15.996     High Low
cufflinks 23.061     High  
cufflinks 21.705     High  
cufflinks 31.24     High  
cufflinks 45.795     High High
cufflinks 29.42     High  
cufflinks 16.785     High Low
cufflinks 27.455     High  
cufflinks 21.405     High  
cufflinks 22.382     High  
cufflinks 48.21     High High
cufflinks 22.3     High  
cufflinks 22.522     High  

0 Strain