Gene : Seita.6G047600 S. italica v2.2
Genomic Order:  476 Name:  ? Seita.6G047600
Secondary Identifier:  ? PAC:32698855
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G047600 0.5kb upstream 0.5kb upstream 3621 true scaffold_6: 3719099-3722719 Setaria italica
Seita.6G047600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 3722220-3722719 Setaria italica
Seita.6G047600 0.5kb downstream 0.5kb downstream 3621 true scaffold_6: 3718599-3722219 Setaria italica
Seita.6G047600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 3718599-3719098 Setaria italica
Seita.6G047600 1.0kb upstream 1.0kb upstream 4121 true scaffold_6: 3719099-3723219 Setaria italica
Seita.6G047600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 3722220-3723219 Setaria italica
Seita.6G047600 1.0kb downstream 1.0kb downstream 4121 true scaffold_6: 3718099-3722219 Setaria italica
Seita.6G047600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 3718099-3719098 Setaria italica
Seita.6G047600 2.0kb upstream 2.0kb upstream 5121 true scaffold_6: 3719099-3724219 Setaria italica
Seita.6G047600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 3722220-3724219 Setaria italica
Seita.6G047600 2.0kb downstream 2.0kb downstream 5121 true scaffold_6: 3717099-3722219 Setaria italica
Seita.6G047600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 3717099-3719098 Setaria italica
Seita.6G047600 5.0kb upstream 5.0kb upstream 8121 true scaffold_6: 3719099-3727219 Setaria italica
Seita.6G047600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 3722220-3727219 Setaria italica
Seita.6G047600 5.0kb downstream 5.0kb downstream 8121 true scaffold_6: 3714099-3722219 Setaria italica
Seita.6G047600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 3714099-3719098 Setaria italica
Seita.6G047600 10.0kb upstream 10.0kb upstream 13121 true scaffold_6: 3719099-3732219 Setaria italica
Seita.6G047600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 3722220-3732219 Setaria italica
Seita.6G047600 10.0kb downstream 10.0kb downstream 13121 true scaffold_6: 3709099-3722219 Setaria italica
Seita.6G047600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 3709099-3719098 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188177 5267 Panicoideae View MSA
124585362 5269 Grass View MSA
122042514 5273 Angiosperm View MSA
121347844 5274 Embryophyte View MSA
123425000 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.764        
cufflinks 1.916       High
cufflinks 1.037        
cufflinks 0.934        
cufflinks 0.734        
cufflinks 1.955       High
cufflinks 1.163        
cufflinks 1.247        
cufflinks 0.582       Low
cufflinks 1.993       High
cufflinks 1.02        
cufflinks 0.633       Low
cufflinks 0.752        
cufflinks 0.963        
cufflinks 0.881        
cufflinks 2.201       High
cufflinks 0.687       Low
cufflinks 2.725       High
cufflinks 1.291        
cufflinks 0.759        

0 Strain