Gene : Seita.6G047700 S. italica v2.2
Defline:  (1 of 1) PTHR11932//PTHR11932:SF79 - CULLIN Genomic Order:  477
Name:  ? Seita.6G047700 Secondary Identifier:  ? PAC:32700872
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G047700 0.5kb upstream 0.5kb upstream 2474 true scaffold_6: 3726369-3728842 Setaria italica
Seita.6G047700 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 3726369-3726868 Setaria italica
Seita.6G047700 0.5kb downstream 0.5kb downstream 2474 true scaffold_6: 3726869-3729342 Setaria italica
Seita.6G047700 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 3728843-3729342 Setaria italica
Seita.6G047700 1.0kb upstream 1.0kb upstream 2974 true scaffold_6: 3725869-3728842 Setaria italica
Seita.6G047700 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 3725869-3726868 Setaria italica
Seita.6G047700 1.0kb downstream 1.0kb downstream 2974 true scaffold_6: 3726869-3729842 Setaria italica
Seita.6G047700 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 3728843-3729842 Setaria italica
Seita.6G047700 2.0kb upstream 2.0kb upstream 3974 true scaffold_6: 3724869-3728842 Setaria italica
Seita.6G047700 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 3724869-3726868 Setaria italica
Seita.6G047700 2.0kb downstream 2.0kb downstream 3974 true scaffold_6: 3726869-3730842 Setaria italica
Seita.6G047700 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 3728843-3730842 Setaria italica
Seita.6G047700 5.0kb upstream 5.0kb upstream 6974 true scaffold_6: 3721869-3728842 Setaria italica
Seita.6G047700 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 3721869-3726868 Setaria italica
Seita.6G047700 5.0kb downstream 5.0kb downstream 6974 true scaffold_6: 3726869-3733842 Setaria italica
Seita.6G047700 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 3728843-3733842 Setaria italica
Seita.6G047700 10.0kb upstream 10.0kb upstream 11974 true scaffold_6: 3716869-3728842 Setaria italica
Seita.6G047700 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 3716869-3726868 Setaria italica
Seita.6G047700 10.0kb downstream 10.0kb downstream 11974 true scaffold_6: 3726869-3738842 Setaria italica
Seita.6G047700 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 3728843-3738842 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194057 5267 Panicoideae View MSA
124579615 5269 Grass View MSA
122047217 5273 Angiosperm View MSA
121346252 5274 Embryophyte View MSA
123427758 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.889     High  
cufflinks 42.979     High High
cufflinks 37.931     High  
cufflinks 28.051     High  
cufflinks 25.36     High Low
cufflinks 38.912     High  
cufflinks 32.613     High  
cufflinks 24.297     High Low
cufflinks 25.191     High Low
cufflinks 20.929     High Low
cufflinks 36.382     High  
cufflinks 36.075     High  
cufflinks 24.486     High Low
cufflinks 31.448     High  
cufflinks 35.422     High  
cufflinks 33.379     High  
cufflinks 31.569     High  
cufflinks 48.129     High High
cufflinks 32.245     High  
cufflinks 30.469     High  

0 Strain