Gene : Seita.6G050700 S. italica v2.2
Defline:  (1 of 3) PTHR23310//PTHR23310:SF67 - ACYL-COA-BINDING PROTEIN, ACBP Genomic Order:  507
Name:  ? Seita.6G050700 Secondary Identifier:  ? PAC:32698815
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G050700 0.5kb upstream 0.5kb upstream 3277 true scaffold_6: 3949782-3953058 Setaria italica
Seita.6G050700 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 3949782-3950281 Setaria italica
Seita.6G050700 0.5kb downstream 0.5kb downstream 3277 true scaffold_6: 3950282-3953558 Setaria italica
Seita.6G050700 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 3953059-3953558 Setaria italica
Seita.6G050700 1.0kb upstream 1.0kb upstream 3777 true scaffold_6: 3949282-3953058 Setaria italica
Seita.6G050700 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 3949282-3950281 Setaria italica
Seita.6G050700 1.0kb downstream 1.0kb downstream 3777 true scaffold_6: 3950282-3954058 Setaria italica
Seita.6G050700 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 3953059-3954058 Setaria italica
Seita.6G050700 2.0kb upstream 2.0kb upstream 4777 true scaffold_6: 3948282-3953058 Setaria italica
Seita.6G050700 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 3948282-3950281 Setaria italica
Seita.6G050700 2.0kb downstream 2.0kb downstream 4777 true scaffold_6: 3950282-3955058 Setaria italica
Seita.6G050700 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 3953059-3955058 Setaria italica
Seita.6G050700 5.0kb upstream 5.0kb upstream 7777 true scaffold_6: 3945282-3953058 Setaria italica
Seita.6G050700 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 3945282-3950281 Setaria italica
Seita.6G050700 5.0kb downstream 5.0kb downstream 7777 true scaffold_6: 3950282-3958058 Setaria italica
Seita.6G050700 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 3953059-3958058 Setaria italica
Seita.6G050700 10.0kb upstream 10.0kb upstream 12777 true scaffold_6: 3940282-3953058 Setaria italica
Seita.6G050700 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 3940282-3950281 Setaria italica
Seita.6G050700 10.0kb downstream 10.0kb downstream 12777 true scaffold_6: 3950282-3963058 Setaria italica
Seita.6G050700 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 3953059-3963058 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193278 5267 Panicoideae View MSA
124584246 5269 Grass View MSA
122043640 5273 Angiosperm View MSA
121350915 5274 Embryophyte View MSA
123427551 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.949     High  
cufflinks 94.76     High  
cufflinks 117.134     High  
cufflinks 79.841     High  
cufflinks 56.759     High  
cufflinks 78.032     High  
cufflinks 58.219     High  
cufflinks 128.621     High  
cufflinks 60.562     High  
cufflinks 88.316     High  
cufflinks 63.425     High  
cufflinks 54.505     High  
cufflinks 53.117     High  
cufflinks 145.437     High  
cufflinks 72.133     High  
cufflinks 11.077       Low
cufflinks 77.488     High  
cufflinks 1.994       Low
cufflinks 113.212     High  
cufflinks 86.349     High  

0 Strain