Gene : Seita.6G053800 S. italica v2.2
Defline:  (1 of 1) PTHR31747:SF1 - PROTEIN LOL1 Genomic Order:  538
Name:  ? Seita.6G053800 Secondary Identifier:  ? PAC:32699047
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G053800 0.5kb upstream 0.5kb upstream 3487 true scaffold_6: 4255328-4258814 Setaria italica
Seita.6G053800 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4255328-4255827 Setaria italica
Seita.6G053800 0.5kb downstream 0.5kb downstream 3487 true scaffold_6: 4255828-4259314 Setaria italica
Seita.6G053800 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4258815-4259314 Setaria italica
Seita.6G053800 1.0kb upstream 1.0kb upstream 3987 true scaffold_6: 4254828-4258814 Setaria italica
Seita.6G053800 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4254828-4255827 Setaria italica
Seita.6G053800 1.0kb downstream 1.0kb downstream 3987 true scaffold_6: 4255828-4259814 Setaria italica
Seita.6G053800 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4258815-4259814 Setaria italica
Seita.6G053800 2.0kb upstream 2.0kb upstream 4987 true scaffold_6: 4253828-4258814 Setaria italica
Seita.6G053800 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4253828-4255827 Setaria italica
Seita.6G053800 2.0kb downstream 2.0kb downstream 4987 true scaffold_6: 4255828-4260814 Setaria italica
Seita.6G053800 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4258815-4260814 Setaria italica
Seita.6G053800 5.0kb upstream 5.0kb upstream 7987 true scaffold_6: 4250828-4258814 Setaria italica
Seita.6G053800 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4250828-4255827 Setaria italica
Seita.6G053800 5.0kb downstream 5.0kb downstream 7987 true scaffold_6: 4255828-4263814 Setaria italica
Seita.6G053800 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4258815-4263814 Setaria italica
Seita.6G053800 10.0kb upstream 10.0kb upstream 12987 true scaffold_6: 4245828-4258814 Setaria italica
Seita.6G053800 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4245828-4255827 Setaria italica
Seita.6G053800 10.0kb downstream 10.0kb downstream 12987 true scaffold_6: 4255828-4268814 Setaria italica
Seita.6G053800 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4258815-4268814 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188260 5267 Panicoideae View MSA
124583041 5269 Grass View MSA
122043941 5273 Angiosperm View MSA
121347680 5274 Embryophyte View MSA
123425652 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.395     High  
cufflinks 21.994     High  
cufflinks 1.841        
cufflinks 1.321       Low
cufflinks 17.559     High  
cufflinks 20.139     High  
cufflinks 50.854     High High
cufflinks 23.817     High  
cufflinks 33.321     High High
cufflinks 7.317        
cufflinks 12.006        
cufflinks 0.921       Low
cufflinks 13.536     High  
cufflinks 2.237        
cufflinks 0.301       Low
cufflinks 27.067     High  
cufflinks 1.157       Low
cufflinks 8.481        
cufflinks 7.182        
cufflinks 0.744       Low

0 Strain