Gene : Seita.6G052100 S. italica v2.2
Defline:  (1 of 1) PTHR13156 - NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-A SUBUNIT Genomic Order:  521
Name:  ? Seita.6G052100 Secondary Identifier:  ? PAC:32699186
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G052100 0.5kb upstream 0.5kb upstream 2686 true scaffold_6: 4066819-4069504 Setaria italica
Seita.6G052100 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4069005-4069504 Setaria italica
Seita.6G052100 0.5kb downstream 0.5kb downstream 2686 true scaffold_6: 4066319-4069004 Setaria italica
Seita.6G052100 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4066319-4066818 Setaria italica
Seita.6G052100 1.0kb upstream 1.0kb upstream 3186 true scaffold_6: 4066819-4070004 Setaria italica
Seita.6G052100 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4069005-4070004 Setaria italica
Seita.6G052100 1.0kb downstream 1.0kb downstream 3186 true scaffold_6: 4065819-4069004 Setaria italica
Seita.6G052100 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4065819-4066818 Setaria italica
Seita.6G052100 2.0kb upstream 2.0kb upstream 4186 true scaffold_6: 4066819-4071004 Setaria italica
Seita.6G052100 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4069005-4071004 Setaria italica
Seita.6G052100 2.0kb downstream 2.0kb downstream 4186 true scaffold_6: 4064819-4069004 Setaria italica
Seita.6G052100 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4064819-4066818 Setaria italica
Seita.6G052100 5.0kb upstream 5.0kb upstream 7186 true scaffold_6: 4066819-4074004 Setaria italica
Seita.6G052100 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4069005-4074004 Setaria italica
Seita.6G052100 5.0kb downstream 5.0kb downstream 7186 true scaffold_6: 4061819-4069004 Setaria italica
Seita.6G052100 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4061819-4066818 Setaria italica
Seita.6G052100 10.0kb upstream 10.0kb upstream 12186 true scaffold_6: 4066819-4079004 Setaria italica
Seita.6G052100 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4069005-4079004 Setaria italica
Seita.6G052100 10.0kb downstream 10.0kb downstream 12186 true scaffold_6: 4056819-4069004 Setaria italica
Seita.6G052100 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4056819-4066818 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179640 5267 Panicoideae View MSA
124574977 5269 Grass View MSA
122043050 5273 Angiosperm View MSA
121344521 5274 Embryophyte View MSA
123424035 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.31        
cufflinks 18.298     High  
cufflinks 11.87     High  
cufflinks 16.491     High  
cufflinks 15.482     High  
cufflinks 16.943     High  
cufflinks 13.018        
cufflinks 32.099     High High
cufflinks 17.149     High  
cufflinks 51.235     High High
cufflinks 16.368     High  
cufflinks 21.777     High  
cufflinks 27.498     High  
cufflinks 19.662     High  
cufflinks 21.796     High  
cufflinks 8.367       Low
cufflinks 31.73     High High
cufflinks 5.073       Low
cufflinks 16.51     High  
cufflinks 28.757     High  

0 Strain